def list(args):
"""Retrieves a list of metabolites by experiment ID, platform ID
required parameters:
experimentID
platformID
:rtype: response json
:return: Returns a response object from the webservice in the json format if success raises exception otherwise
"""
# get list service url
svc_url = svc.get_list_base_url()
try:
# execute request
response = rh.build_payload(svc_url, args, 'list')
print json.dumps(response)
print '---'
except ValueError as e:
error_msg = "ValueError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except requests.exceptions.HTTPError as e:
error_msg = "HTTPError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except ConnectionError as e:
error_msg = "ConnectionError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except Exception as e:
error_msg = "GenericError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
def list(args):
"""Retrieves a list of all experiments
no parameters required
:rtype: response json
:return: Returns a response object from the webservice in the json format if success raises exception otherwise
"""
# get list service url
svc_url = svc.get_list_base_url()
try:
# execute request
response = es.get_experiments_as_json(svc_url, args)
log.debug("List of Experiments:")
log.debug(response)
print json.dumps(response)
print "---"
except ValueError as e:
error_msg = "ValueError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except requests.exceptions.HTTPError as e:
error_msg = "HTTPError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except ConnectionError as e:
error_msg = "ConnectionError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except Exception as e:
error_msg = "GenericError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
def list(args):
"""Retrieves a list of all metabolites by experiment ID, and platform ID
required parameters:
experimentID
platformID
:rtype: response json
:return: Returns a response object from the webservice in the json format if success raises exception otherwise
"""
# get list service url
svc_url = svc.get_list_base_url()
try:
# execute request
response = ms.get_metabolites_as_json(svc_url, args)
log.debug("List of Metabolites:")
log.debug(response)
print json.dumps(response)
print '---'
except ValueError as e:
error_msg = "Value Error:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except requests.exceptions.HTTPError as e:
error_msg = "HTTP Error:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except ConnectionError as e:
error_msg = "ConnectionError:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except exception.NotFound as e:
error_msg = e.message
log.error(error_msg, exc_info=True)
raise exception.NotFound(error_msg)
except exception.InvalidParameter as e:
error_msg = e.message
log.error(error_msg, exc_info=True)
raise exception.InvalidParameter(error_msg)
except exception.EmptyResponse as e:
error_msg = e.message
log.error(error_msg, exc_info=True)
raise exception.EmptyResponse(error_msg)
except Exception as e:
error_msg = e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
