def eval_non_local_interaction(problem, region_name, var_name,
integral_name, f1, f2, kernel_function,
pbar=None):
"""
Single element group only!
"""
var = problem.get_variables()[var_name]
region = problem.domain.regions[region_name]
integral = problem.integrals[integral_name]
qps = get_physical_qps(region, integral)
igs = qps.values.keys()
ig = igs[0]
qp = qps.values[ig]
n_el, n_qp = f1.shape[:2]
vg, _ = var.get_mapping(ig, region, integral, 'volume')
# Weighted jacobian.
det = vg.det
shape = (n_el * n_qp, 1, 1)
val1 = f1 * det
val2 = f2 * det
val1.shape = shape
val2.shape = shape
coef = nm.zeros(shape, dtype=val1.dtype)
if pbar is not None:
pbar.init(qp.shape[0])
pbar.update(0)
for ii, coor in enumerate(qp):
## tt = time.clock()
kernel = kernel_function(coor, qp)
kernel.shape = val2.shape
## print'aa', time.clock() - tt
## tt = time.clock()
coef[ii] = (kernel * val2).sum()
## print 'bb', time.clock() - tt
if pbar is not None:
pbar.update(ii)
val = (val1 * coef).sum()
if pbar is not None:
print
return val
def get_physical_qps(self):
"""
Get physical quadrature points corresponding to the term region
and integral.
"""
from sfepy.fem.mappings import get_physical_qps, PhysicalQPs
if self.integration == 'point':
phys_qps = PhysicalQPs(self.region.igs)
elif self.integration == 'plate':
phys_qps = get_physical_qps(self.region, self.integral,
map_kind='v')
else:
phys_qps = get_physical_qps(self.region, self.integral)
return phys_qps
def get_physical_qps(self):
"""
Get physical quadrature points corresponding to the term region
and integral.
"""
from sfepy.fem.mappings import get_physical_qps
phys_qps = get_physical_qps(self.region, self.integral)
return phys_qps
def get_physical_qps(self):
"""
Get physical quadrature points corresponding to the term region
and integral.
"""
from sfepy.fem.mappings import get_physical_qps, PhysicalQPs
if self.integration == 'point':
phys_qps = PhysicalQPs(self.region.igs)
elif self.integration == 'plate':
phys_qps = get_physical_qps(self.region,
self.integral,
map_kind='v')
else:
phys_qps = get_physical_qps(self.region, self.integral)
return phys_qps
def get_physical_qps(self):
"""
Get physical quadrature points corresponding to the term region
and integral.
"""
from sfepy.fem.mappings import get_physical_qps
phys_qps = get_physical_qps(self.region, self.integral)
return phys_qps
def test_invariance_qp(self):
from sfepy import data_dir
from sfepy.fem import (Mesh, Domain, H1NodalVolumeField, Variables,
Integral)
from sfepy.terms import Term
from sfepy.fem.mappings import get_physical_qps
mesh = Mesh('source mesh', data_dir + '/meshes/3d/block.mesh')
bbox = mesh.get_bounding_box()
dd = bbox[1, :] - bbox[0, :]
data = nm.sin(4.0 * nm.pi * mesh.coors[:,0:1] / dd[0]) \
* nm.cos(4.0 * nm.pi * mesh.coors[:,1:2] / dd[1])
variables = {
'u': ('unknown field', 'scalar_tp', 0),
'v': ('test field', 'scalar_tp', 'u'),
}
domain = Domain('domain', mesh)
omega = domain.create_region('Omega', 'all')
field = H1NodalVolumeField('scalar_tp',
nm.float64,
1,
omega,
approx_order=1)
ff = {field.name: field}
vv = Variables.from_conf(transform_variables(variables), ff)
u = vv['u']
u.set_from_mesh_vertices(data)
integral = Integral('i', order=2)
term = Term.new('ev_volume_integrate(u)', integral, omega, u=u)
term.setup()
val1, _ = term.evaluate(mode='qp')
val1 = val1.ravel()
qps = get_physical_qps(omega, integral)
coors = qps.get_merged_values()
val2 = u.evaluate_at(coors).ravel()
self.report('max. difference:', nm.abs(val1 - val2).max())
ok = nm.allclose(val1, val2, rtol=0.0, atol=1e-12)
self.report('invariance in qp: %s' % ok)
return ok
def test_invariance_qp(self):
from sfepy import data_dir
from sfepy.fem import (Mesh, Domain, H1NodalVolumeField,
Variables, Integral)
from sfepy.terms import Term
from sfepy.fem.mappings import get_physical_qps
mesh = Mesh('source mesh', data_dir + '/meshes/3d/block.mesh')
bbox = mesh.get_bounding_box()
dd = bbox[1,:] - bbox[0,:]
data = nm.sin(4.0 * nm.pi * mesh.coors[:,0:1] / dd[0]) \
* nm.cos(4.0 * nm.pi * mesh.coors[:,1:2] / dd[1])
variables = {
'u' : ('unknown field', 'scalar_tp', 0),
'v' : ('test field', 'scalar_tp', 'u'),
}
domain = Domain('domain', mesh)
omega = domain.create_region('Omega', 'all')
field = H1NodalVolumeField('scalar_tp', nm.float64, 1, omega,
approx_order=1)
ff = {field.name : field}
vv = Variables.from_conf(transform_variables(variables), ff)
u = vv['u']
u.set_from_mesh_vertices(data)
integral = Integral('i', order=2)
term = Term.new('ev_volume_integrate(u)', integral, omega, u=u)
term.setup()
val1, _ = term.evaluate(mode='qp')
val1 = val1.ravel()
qps = get_physical_qps(omega, integral)
coors = qps.get_merged_values()
val2 = u.evaluate_at(coors).ravel()
self.report('max. difference:', nm.abs(val1 - val2).max())
ok = nm.allclose(val1, val2, rtol=0.0, atol=1e-12)
self.report('invariance in qp: %s' % ok)
return ok