def setup_terms(self, regions, variables, materials, caches=None, user=None):
"""Parse equations and create term instances.
Grabs references to materials and variables."""
if caches is None:
self.caches = DataCaches()
else:
self.caches = caches
self.materials = materials
self.variables = variables
for eq in self:
eq.setup_terms(regions, variables, materials, self.caches, user)
def assign_caches(self, caches=None):
from sfepy.terms import cache_table, DataCaches
if not hasattr(self, "use_caches"):
return
if caches is None:
caches = DataCaches()
## print self.name
for name, arg_lists in self.use_caches.iteritems():
## print self.arg_names
## print name, arg_lists
for args in arg_lists:
## Order should be handled in terms...
args = copy(args)
if len(args) and (type(args[-1]) == dict):
history_sizes = args.pop()
else:
history_sizes = None
ans = [self.get_arg_name(arg, full=True) for arg in args]
cname = "_".join([name] + ans)
## print self.name, name, arg_lists, args, cname
## print history_sizes
if caches.has_key(cname):
caches[cname].merge_history_sizes(history_sizes)
else:
## print 'new'
try:
constructor = cache_table[name]
except:
raise RuntimeError, "cache not found! %s in %s" % (name, sorted(cache_table.keys()))
cache = constructor(cname, ans, history_sizes)
caches.insert_cache(cache)
caches.insert_term(cname, self.name, ans)
self.caches = caches
class Equations(Container):
##
# c: 18.04.2006, r: 20.02.2008
def from_conf(conf):
objs = OneTypeList(Equation)
conf = copy(conf)
tps = conf.pop("namespaces", {})
itps = invert_dict(tps, True)
ii = 0
for name, desc in conf.iteritems():
output('equation "%s":' % name)
output(desc)
eq = Equation(name=name, desc=desc, itps=itps)
objs.append(eq)
ii += 1
obj = Equations(objs, itps=itps)
return obj
from_conf = staticmethod(from_conf)
def setup_terms(self, regions, variables, materials, caches=None, user=None):
"""Parse equations and create term instances.
Grabs references to materials and variables."""
if caches is None:
self.caches = DataCaches()
else:
self.caches = caches
self.materials = materials
self.variables = variables
for eq in self:
eq.setup_terms(regions, variables, materials, self.caches, user)
##
# c: ??, r: 26.02.2008
def describe_geometry(self, geometries, variables, integrals):
output("describing geometries...")
tt = time.clock()
for eq in self:
eq.describe_geometry(geometries, variables, integrals)
output("...done in %.2f s" % (time.clock() - tt))
##
# 24.08.2006, c
# 24.04.2007
def get_term_geometries(self):
tgs = set()
for eq in self:
tgs.update(eq.get_term_geometries())
return tgs
##
# 16.11.2007, c
def get_term_integral_names(self):
i_names = set()
for eq in self:
i_names.update(eq.get_term_integral_names())
return i_names
def get_variable_names(self):
"""Return the list of names of all variables used in equations."""
vns = set()
for eq in self:
for term in eq.terms:
vns.update(term.get_variable_names())
return list(vns)
##
# 27.02.2007, c
def invalidate_term_caches(self):
for cache in self.caches.itervalues():
cache.clear()
##
# c: 07.05.2008, r: 07.05.2008
def reset_term_caches(self):
for cache in self.caches.itervalues():
cache.reset()
##
# 02.03.2007, c
def set_cache_mode(self, cache_override):
for cache in self.caches.itervalues():
cache.set_mode(cache_override)
def time_update(self, ts):
for eq in self:
for term in eq.terms:
term.time_update(ts)
##
# c: 02.04.2008, r: 02.04.2008
def init_time(self, ts):
for cache in self.caches.itervalues():
cache.init_time(ts)
##
# 08.06.2007, c
def advance(self, ts):
for cache in self.caches.itervalues():
cache.advance(ts.step + 1)
def eval_term(
state,
term_desc,
conf,
domain,
variables,
materials,
ts,
funmod=None,
chunk_size=1000,
term_prefixes=None,
caches=None,
ret_caches=False,
override=True,
new_geometries=True,
dw_mode="vector",
tangent_matrix=None,
**kwargs
):
"""Evaluate a term. May not succeed!"""
if term_prefixes is None:
term_prefixes = {}
if caches is None:
caches = DataCaches()
equation = Equation.from_desc("tmp", term_desc, term_prefixes)
equation.setup_terms(domain.regions, variables, materials, caches, kwargs)
for cache in caches.itervalues():
cache.set_mode(override=override)
if new_geometries:
i_names = equation.get_term_integral_names()
integrals = Integrals.from_conf(conf.integrals, i_names)
integrals.set_quadratures(quadratures)
geometries = {}
equation.describe_geometry(geometries, variables, integrals)
variables.data_from_state(state)
if "call_mode" in kwargs:
itype = kwargs["call_mode"].split("_")[0]
else:
# itype according to the first term in term_desc!
itype = equation.terms[0].itype
if itype == "dw":
variables.setup_dof_conns()
if not variables.has_eq_map:
variables.equation_mapping(conf.ebcs, conf.epbcs, domain.regions, ts, funmod)
variables.setup_lcbc_operators(conf.lcbcs, domain.regions)
variables.setup_a_dof_conns()
if dw_mode == "vector":
residual = variables.create_stripped_state_vector()
assemble_vector(residual, equation, variables, materials, chunk_size, group_can_fail=False, **kwargs)
if variables.has_lcbc:
op_lcbc = variables.op_lcbc
residual = op_lcbc.T * residual
ret_val = residual
elif dw_mode == "matrix":
if tangent_matrix is None:
tangent_matrix = variables.create_matrix_graph()
tangent_matrix.data[:] = 0.0
assemble_matrix(tangent_matrix, equation, variables, materials, chunk_size, group_can_fail=False, **kwargs)
if variables.has_lcbc:
op_lcbc = variables.op_lcbc
tangent_matrix = op_lcbc.T * tangent_matrix * op_lcbc
tangent_matrix = tangent_matrix.tocsr()
tangent_matrix.sort_indices()
ret_val = tangent_matrix
else:
print dw_mode
raise ValueError
elif itype == "d":
kwargs.setdefault("call_mode", "d_eval")
val = 0.0
for term in equation.terms:
args = build_args(term, variables, materials, **kwargs)
for ig in term.iter_groups():
for aux, iels, status in term(chunk_size=chunk_size, **args):
val += term.sign * aux
ret_val = val
elif itype == "di":
val = None
for term in equation.terms:
args = build_args(term, variables, materials, **kwargs)
for ig in term.iter_groups():
for aux, iels, status in term(chunk_size=chunk_size, **args):
if val is None:
val = term.sign * aux
else:
val += term.sign * aux
ret_val = val
elif (itype == "de") or (itype == "dq"):
val = None
for term in equation.terms:
args = build_args(term, variables, materials, **kwargs)
for ig in term.iter_groups():
for aux, iels, status in term(chunk_size=chunk_size, **args):
if val is None:
val = term.sign * aux
else:
val = nm.concatenate((val, term.sign * aux), axis=0)
ret_val = val
else:
raise NotImplementedError, "unknown term integration type: %s" % itype
if ret_caches:
return ret_val, caches
else:
return ret_val