def load_nifti(self, filename):
if filename==None:
dialog = gtk.FileSelection('Choose nifti file')
#dialog = gtk.FileChooserDialog('Choose nifti file')
#dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(shared.get_last_dir())
response = dialog.run()
filename = dialog.get_filename()
dialog.destroy()
if response == gtk.RESPONSE_OK:
print "Loading:", filename
else:
return False
shared.set_file_selection(filename)
reader = vtkNiftiImageReader()
reader.SetFileName(filename)
reader.Update()
if not reader:
return False
else:
imageData = reader.GetOutput()
EventHandler().notify('set image data', imageData)
EventHandler().notify("set axes directions")
EventHandler().set_nifti(reader)
self.store_current_camera_fpus()
EventHandler().notify("render now")
return True
def add_roi(self,*args):
dialog = gtk.FileSelection('Choose filename for ROI mask')
dialog.set_filename(shared.get_last_dir())
dialog.show()
response = dialog.run()
if response==gtk.RESPONSE_OK:
fname = dialog.get_filename()
dialog.destroy()
try:
#Actually add ROI
self.nroi+=1
tree_iter = self.tree_roi.append(None)
self.tree_roi.set(tree_iter,0,self.nroi,1,os.path.split(fname)[1],2,fname,3,True)
self.__update_treeview_visibility()
roi_image_reader = vtkNiftiImageReader()
roi_image_reader.SetFileName(fname)
roi_image_reader.Update()
roi_id = self.tree_roi.get(tree_iter,0)
self.paramd[roi_id] = RoiParams(roi_image_reader.GetOutput())
#self.paramd[roi_id].update_pipeline()
#print self.paramd[roi_id].intensity
shared.set_file_selection(fname)
except IOError:
error_msg(
'Could not load ROI mask from %s' % fname,
)
finally:
self.__update_treeview_visibility()
else: dialog.destroy()
self.render()
def ok_clicked(w):
fname = dialog.get_filename()
shared.set_file_selection(fname)
try: EventHandler().save_registration_as(fname)
except IOError:
error_msg('Could not save data to %s' % fname,
)
else:
self.fileName = fname
dialog.destroy()
def ok_clicked(w):
fname = dialog.get_filename()
shared.set_file_selection(fname)
try: EventHandler().save_registration_as(fname)
except IOError:
error_msg('Could not save data to %s' % fname,
)
else:
self.fileName = fname
dialog.destroy()
def on_buttonSaveAsInfo_clicked(button=None):
dialog = gtk.FileSelection('Choose info file to save parameters to')
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryInfoFile'].get_text() or
shared.get_last_dir())
response = dialog.run()
fname = dialog.get_filename()
dialog.destroy()
if response == gtk.RESPONSE_OK:
widgets.save_params_to_file(fname)
shared.set_file_selection(fname)
def on_buttonSaveAsInfo_clicked(button=None):
dialog = gtk.FileSelection('Choose info file to save parameters to')
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryInfoFile'].get_text() or
shared.get_last_dir())
response = dialog.run()
fname = dialog.get_filename()
dialog.destroy()
if response == gtk.RESPONSE_OK:
widgets.save_params_to_file(fname)
shared.set_file_selection(fname)
def on_buttonOpenInfo_clicked(button=None):
dialog = gtk.FileSelection('Choose info file')
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryInfoFile'].get_text() or
shared.get_last_dir())
response = dialog.run()
fname = dialog.get_filename()
dialog.destroy()
if response == gtk.RESPONSE_OK:
if widgets.load_params_from_file(fname):
GladeHandlers.__dict__['on_buttonPreview_clicked']()
shared.set_file_selection(fname)
def on_buttonOpenInfo_clicked(button=None):
dialog = gtk.FileSelection('Choose info file')
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryInfoFile'].get_text() or
shared.get_last_dir())
response = dialog.run()
fname = dialog.get_filename()
dialog.destroy()
if response == gtk.RESPONSE_OK:
if widgets.load_params_from_file(fname):
GladeHandlers.__dict__['on_buttonPreview_clicked']()
shared.set_file_selection(fname)
def on_buttonOpenInfo_clicked(button=None):
dialog = FileManager()
print shared.get_last_dir()
dialog.set_lastdir(shared.get_last_dir())
fname = dialog.get_filename('Choose info file') #using gtkutils to modernize file dlg -eli
#dialog.set_transient_for(widgets['dlgReader'])
#dialog.set_filename(widgets['entryInfoFile'].get_text() or
#shared.get_last_dir())
#response = dialog.run()
#fname = dialog.get_filename()
#dialog.destroy()
#if response == gtk.RESPONSE_OK:
if widgets.load_params_from_file(fname):
GladeHandlers.__dict__['on_buttonPreview_clicked']()
shared.set_file_selection(fname)
def on_buttonDir_clicked(button=None):
dialog = gtk.FileSelection('Choose image file directory')
dialog.set_filename(shared.get_last_dir())
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryDir'].get_text())
response = dialog.run()
if response == gtk.RESPONSE_OK:
dir = dialog.get_filename()
if os.path.isdir(dir):
widgets['entryDir'].set_text(dir)
shared.set_file_selection(dir)
dialog.destroy()
else:
error_msg('%s is not a directory' % dir, dialog)
else:
dialog.destroy()
def on_buttonDir_clicked(button=None):
dialog = gtk.FileSelection('Choose image file directory')
dialog.set_filename(shared.get_last_dir())
dialog.set_transient_for(widgets['dlgReader'])
dialog.set_filename(widgets['entryDir'].get_text())
response = dialog.run()
if response == gtk.RESPONSE_OK:
dir = dialog.get_filename()
if os.path.isdir(dir):
widgets['entryDir'].set_text(dir)
shared.set_file_selection(dir)
dialog.destroy()
else:
error_msg('%s is not a directory' % dir, dialog)
else:
dialog.destroy()
def load_from(self, button):
dialog = FileManager() #modernizing the dialog box
dialog.set_lastdir(shared.get_last_dir())
fname = dialog.get_filename('Choose filename for marker info')
#dialog = gtk.FileSelection()
#dialog.show()
#response = dialog.run()
#if response==gtk.RESPONSE_OK:
# fname = dialog.get_filename()
# dialog.destroy()
try:
EventHandler().load_markers_from(fname)
except IOError:
error_msg('Could not load markers from %s' % fname, )
else:
shared.set_file_selection(fname)
self.fileName = fname
def load_from(self, button):
dialog = FileManager() #modernizing the dialog box
dialog.set_lastdir(shared.get_last_dir())
fname = dialog.get_filename('Choose filename for marker info')
#dialog = gtk.FileSelection()
#dialog.show()
#response = dialog.run()
#if response==gtk.RESPONSE_OK:
# fname = dialog.get_filename()
# dialog.destroy()
try: EventHandler().load_markers_from(fname)
except IOError:
error_msg(
'Could not load markers from %s' % fname,
)
else:
shared.set_file_selection(fname)
self.fileName = fname
def load_markers(self, *args):
dialog = gtk.FileSelection('Choose filename for marker info')
dialog.set_filename(shared.get_last_dir())
dialog.show()
response = dialog.run()
if response==gtk.RESPONSE_OK:
fname = dialog.get_filename()
dialog.destroy()
try: EventHandler().load_markers_from(fname)
except IOError:
error_msg(
'Could not load markers from %s' % fname,
)
else:
shared.set_file_selection(fname)
self.markersFileName = fname
else: dialog.destroy()
def show_correlation_props(self, button):
dialog = gtk.FileSelection('Choose filename for correlation data')
dialog.set_filename(shared.get_last_dir())
dialog.show()
response = dialog.run()
if response==gtk.RESPONSE_OK:
fname = dialog.get_filename()
dialog.destroy()
try: EventHandler().load_correlation_from(fname)
except IOError:
error_msg(
'Could not load correlation from %s' % fname,
)
else:
shared.set_file_selection(fname)
self.fileName = fname
else: dialog.destroy()
def show_correlation_props(self, button):
dialog = gtk.FileSelection('Choose filename for correlation data')
dialog.set_filename(shared.get_last_dir())
dialog.show()
response = dialog.run()
if response==gtk.RESPONSE_OK:
fname = dialog.get_filename()
dialog.destroy()
try: EventHandler().load_correlation_from(fname)
except IOError:
error_msg(
'Could not load correlation from %s' % fname,
)
else:
shared.set_file_selection(fname)
self.fileName = fname
else: dialog.destroy()
def __global_preparations():
user_dir = __find_userdir()
shared.set_file_selection(user_dir)
title=title+" - "+filename
window = gtk.Window()
window.set_title(title)
window.connect("destroy", gtk.main_quit)
window.connect("delete_event", gtk.main_quit)
window.set_border_width(10)
window.set_size_request(640, 480) #w,h
window.show()
pwo = PlaneWidgetsWithObservers(window)
pwo.show()
window.add(pwo)
shared.set_file_selection(os.getcwd())
def idle(*args):
pwo.mainToolbar.load_image()
return False
if filename:
#test for filename
if os.path.isfile(filename):
pwo.mainToolbar.niftiFilename=filename
def niftiidle(*args):
pwo.mainToolbar.load_mri()
if surface:
#implement auto surface rendering, good for thorsten
pass
return False
if filename:
title = title + " - " + filename
window = gtk.Window()
window.set_title(title)
window.connect("destroy", gtk.main_quit)
window.connect("delete_event", gtk.main_quit)
window.set_border_width(10)
window.set_size_request(640, 480) #w,h
window.show()
pwo = PlaneWidgetsWithObservers(window)
pwo.show()
window.add(pwo)
shared.set_file_selection(os.getcwd())
def idle(*args):
pwo.mainToolbar.load_image()
return False
if filename:
#test for filename
if os.path.isfile(filename):
pwo.mainToolbar.niftiFilename = filename
def niftiidle(*args):
pwo.mainToolbar.load_mri()
if surface:
