def test_genbank_to_protein(self):
i = 0
exp = self.multi[i]
obs = _genbank_to_protein(self.multi_fp, seq_num=i+1)
exp = Protein(exp[0], metadata=exp[1],
lowercase=True, interval_metadata=exp[2])
self.assertEqual(exp, obs)
def test_genbank_to_protein(self):
i = 0
exp = self.multi[i]
obs = _genbank_to_protein(self.multi_fp, seq_num=i+1)
exp = Protein(exp[0], metadata=exp[1],
lowercase=True, positional_metadata=exp[2])
self.assertEqual(exp, obs)
def test_roundtrip_protein(self):
with io.StringIO() as fh:
_protein_to_genbank(_genbank_to_protein(self.single_lower_fp), fh)
obs = fh.getvalue()
with open(self.single_lower_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_roundtrip_protein(self):
with io.StringIO() as fh:
_protein_to_genbank(_genbank_to_protein(self.single_lower_fp), fh)
obs = fh.getvalue()
with open(self.single_lower_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)