Пример #1
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    def test_roundtrip_rna(self):
        with io.StringIO() as fh:
            _rna_to_genbank(_genbank_to_rna(self.single_rna_fp), fh)
            obs = fh.getvalue()

        with open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)
Пример #2
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    def test_roundtrip_rna(self):
        with io.StringIO() as fh:
            _rna_to_genbank(_genbank_to_rna(self.single_rna_fp), fh)
            obs = fh.getvalue()

        with open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)
Пример #3
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    def test_rna_to_genbank(self):
        with io.StringIO() as fh:
            seq, md, imd, constructor = self.single_rna
            obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
            _rna_to_genbank(obj, fh)
            obs = fh.getvalue()

        with open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)
Пример #4
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    def test_rna_to_genbank(self):
        with io.StringIO() as fh:
            seq, md, imd, constructor = self.single_rna
            obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
            _rna_to_genbank(obj, fh)
            obs = fh.getvalue()

        with open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)
Пример #5
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    def test_rna_to_genbank(self):
        fh = io.StringIO()
        seq, md, pmd, constructor = self.single_rna
        obj = constructor(seq, md, pmd, lowercase=True)
        _rna_to_genbank(obj, fh)
        obs = fh.getvalue()
        fh.close()

        with io.open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)
Пример #6
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    def test_rna_to_genbank(self):
        fh = io.StringIO()
        seq, md, pmd, constructor = self.single_rna
        obj = constructor(seq, md, pmd, lowercase=True)
        _rna_to_genbank(obj, fh)
        obs = fh.getvalue()
        fh.close()

        with io.open(self.single_rna_fp) as fh:
            exp = fh.read()

        self.assertEqual(obs, exp)