def test_standard_code(self):
"""Standard genetic code from NCBI should have correct properties"""
sgc = GeneticCode(*self.ncbi_standard)
self.assertEqual(sgc.code_sequence, "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRI" "IIMTTTTNNKKSSRRVVVVAAAADDEEGGGG")
self.assertEqual(
sgc.start_codon_sequence, "---M---------------M------" "---------M----------------------------"
)
self.assertEqual(sgc.start_codons, {"TTG": "M", "CTG": "M", "ATG": "M"})
self.assertEqual(sgc.id, 1)
self.assertEqual(sgc.name, "Standard Nuclear")
self.assertEqual(sgc["UUU"], "F")
self.assertEqual(sgc.is_start("ATG"), True)
self.assertEqual(sgc.is_start("AAA"), False)
self.assertEqual(sgc.is_stop("UAA"), True)
self.assertEqual(sgc.is_stop("AAA"), False)
self.assertEqual(len(sgc.sense_codons), 61)
self.assertTrue("AAA" in sgc.sense_codons)
self.assertFalse("TGA" in sgc.sense_codons)
def test_standard_code(self):
"""Standard genetic code from NCBI should have correct properties"""
sgc = GeneticCode(*self.ncbi_standard)
self.assertEqual(sgc.code_sequence, 'FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRI'
'IIMTTTTNNKKSSRRVVVVAAAADDEEGGGG')
self.assertEqual(sgc.start_codon_sequence, '---M---------------M------'
'---------M----------------------------')
self.assertEqual(sgc.start_codons, {'TTG': 'M', 'CTG': 'M',
'ATG': 'M'})
self.assertEqual(sgc.id, 1)
self.assertEqual(sgc.name, 'Standard Nuclear')
self.assertEqual(sgc['UUU'], 'F')
self.assertEqual(sgc.is_start('ATG'), True)
self.assertEqual(sgc.is_start('AAA'), False)
self.assertEqual(sgc.is_stop('UAA'), True)
self.assertEqual(sgc.is_stop('AAA'), False)
self.assertEqual(len(sgc.sense_codons), 61)
self.assertTrue('AAA' in sgc.sense_codons)
self.assertFalse('TGA' in sgc.sense_codons)
def test_standard_code(self):
"""Standard genetic code from NCBI should have correct properties"""
sgc = GeneticCode(*self.ncbi_standard)
self.assertEqual(
sgc.code_sequence, 'FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRI'
'IIMTTTTNNKKSSRRVVVVAAAADDEEGGGG')
self.assertEqual(
sgc.start_codon_sequence, '---M---------------M------'
'---------M----------------------------')
self.assertEqual(sgc.start_codons, {
'TTG': 'M',
'CTG': 'M',
'ATG': 'M'
})
self.assertEqual(sgc.id, 1)
self.assertEqual(sgc.name, 'Standard Nuclear')
self.assertEqual(sgc['UUU'], 'F')
self.assertEqual(sgc.is_start('ATG'), True)
self.assertEqual(sgc.is_start('AAA'), False)
self.assertEqual(sgc.is_stop('UAA'), True)
self.assertEqual(sgc.is_stop('AAA'), False)
self.assertEqual(len(sgc.sense_codons), 61)
self.assertTrue('AAA' in sgc.sense_codons)
self.assertFalse('TGA' in sgc.sense_codons)
