def single_helix(ant1, ant2, source):
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_full = A_tensor(ra, dec)
s_axis = []
f_layer = []
for ni in nu_rl:
nu = nu_axis[ni]
I = vis.get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
A_n = A_full[ni]
t_layer = []
for ti in t_rl:
t = t_axis[ti]
A_t = A_n[ti]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(ant1, ant2, r, nu)
next_vista = np.dot(np.dot(A_t, s), phi)
t_layer.append(next_vista)
f_layer.append(np.array(t_layer))
return np.array(f_layer)
def visibility(ant1, ant2, source, nu=151e6, time=None):
"""
Visibility integrand evaluated for a single source.
@ant1 and @ant2 are indices of antannae,
to specify a baseline
@source is a GLEAM catalog object
(see catalog.py for specifications)
@nu : signal frequency [MHz]
@time : local sidereal time [float, radians]
default: None corresponds to run-time LST.
"""
I = get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A = stokes.create_A(ra=ra, dec=dec, lst=time, nu=nu, radians=True)
r = rot.radec2lm(ra, dec, ra0=time)
phi = ant.phase_factor(ant1, ant2, r, nu)
malformed_result = np.dot(np.dot(A, s), phi)
# Hack to get rid of extra array shell surrounding answer
return malformed_result[:, 0]
def fwhm(ant1, ant2, source, nu, max_):
"""
Full width at half maximum
"""
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_n = A_tensor(ra, dec, nu)
s_axis = []
f_layer = []
I = vis.get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
t_layer = []
vnorm1 = None
vnorm2 = None
for ti in t_rl:
t = t_axis[ti]
A_t = A_n[ti]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(ant1, ant2, r, nu)
next_vista = np.dot(np.dot(A_t, s), phi)
vis_norm = np.linalg.norm(next_vista)
temp = vnorm2
vnorm2 = vis_norm
vnorm1 = temp
if vnorm1 is None:
continue
elif 2 * vnorm2 >= max_ and 2 * vnorm1 <= max_:
print("Rise time:", t, "radians")
print("(" + rad_to_time(t) + ")\n")
elif 2 * vnorm2 <= max_ and 2 * vnorm1 >= max_:
print("Set time:", t)
print("(" + rad_to_time(t) + ")")
def picture_tensor():
raise NotImplementedError("Still processes just one source.")
nu_axis = np.arange(50e6, 250e6 + MACRO_EPSILON, 1e6)
A = f_only()
print("\nFinished building partial A-tensor.\n")
r = rot.radec2lm(ra, dec, ra0=lst0)
s_axis = []
for ni in range(len(nu_axis)):
nu = nu_axis[ni]
I = vis.get_I(source, nu)
s_axis.append(np.array([complex(I), 0, 0, 0]))
print("\nFinished building s-vector vector.\n")
ants = ant.ant_pos.copy()
outer_ants = ants.copy()
for outer_ant in outer_ants.keys():
inner_ants = ants.copy()
del inner_ants[outer_ant]
for inner_ant in inner_ants.keys():
phi = ant.phase_factor(outer_ant, inner_ant, r, nu)
next_vt = []
for ni in range(len(nu_axis)):
s = s_axis[ni]
A_n = A[ni]
next_vista = np.dot(np.dot(A_n, s), phi)
next_vt.append(next_vista)
inner_ants[inner_ant] = next_vt
outer_ants[outer_ant] = inner_ants
return outer_ants
def vmax(ant1, ant2, source, nu):
"""
Maximum visibility. For use with fwhm
"""
max_ = float("-inf")
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_n = A_tensor(ra, dec, nu)
s_axis = []
f_layer = []
I = vis.get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
t_layer = []
for ti in t_rl:
t = t_axis[ti]
A_t = A_n[ti]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(ant1, ant2, r, nu)
next_vista = np.dot(np.dot(A_t, s), phi)
vis_norm = np.linalg.norm(next_vista)
if (vis_norm > max_):
max_ = vis_norm
return max_
def single_wedge_spot(source, ti):
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_full = A_tensor(ra, dec)
s_axis = []
for ni in nu_rl:
nu = nu_axis[ni]
I = vis.get_I(source, nu)
s_axis.append(np.array([complex(I), 0, 0, 0]))
kill_timer = 0
for outer_ant in outer_ants.keys():
inner_ants = outer_ants.copy()
del inner_ants[outer_ant]
for inner_ant in inner_ants.keys():
f_layer = []
for ni in nu_rl:
nu = nu_axis[ni]
s = s_axis[ni]
A_n = A_full[ni]
t_layer = []
t = t_axis[ti[kill_timer]]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(outer_ant, inner_ant, r, nu)
A_t = A_n[ti[kill_timer]]
Jonesed = np.dot(A_t, s)
next_vista = np.dot(Jonesed, phi)
f_layer.append(np.array([Jonesed, next_vista]))
f_layer = np.array(f_layer)
inner_ants[inner_ant] = f_layer
"""
* Check the s input vector
* Multiply s by the Jones matrix
* Output visibilities
"""
ad_hoc_labels = ["I", "Q", "U", "V"]
log_enabled = False
x = nu_axis / 1e6
s_axis = np.array(s_axis)
if log_enabled:
s_plot = np.log10(s_axis[:, 0])
else:
s_plot = s_axis[:, 0]
# Jonesed
for i in range(4):
y = f_layer[:, 0, i]
if log_enabled:
plt.plot(x, np.log10(np.abs(y)), label=ad_hoc_labels[i])
else:
plt.plot(x, np.abs(y), label=ad_hoc_labels[i])
"""
plt.plot(
x,
s_plot,
label="s vector, I"
)
"""
plt.legend(loc='upper right')
plt.title(
"Wedge generator, no phase factor. Antennae: " + \
str(outer_ant) + " to " + \
str(inner_ant)
)
plt.xlabel("Frequency [MHz]")
plt.ylabel("Brightness Magnitude [Jy]")
plt.show()
# Jonesed
for i in range(4):
y = f_layer[:, 1, i]
if log_enabled:
plt.plot(x, np.log10(np.abs(y)), label=ad_hoc_labels[i])
else:
plt.plot(x, np.abs(y), label=ad_hoc_labels[i])
"""
* plot A at the point of interest
* do Q/I, U/I ratios
* plot A multiplied by s
"""
"""
plt.plot(
x,
s_plot,
label="s vector, I"
)
"""
plt.legend(loc='upper right')
plt.title(
"Wedge generator, with phase factor. Antennae: " + \
str(outer_ant) + " to " + \
str(inner_ant)
)
plt.xlabel("Frequency [MHz]")
plt.ylabel("Brightness Magnitude [Jy]")
plt.show()
kill_timer += 1
if kill_timer > 3:
return
outer_ants[outer_ant] = inner_ants
return outer_ants
def single_wedge_readout(source):
"""
Return the time indices at which
the source is most visible
over the first three hypothetical plots.
Chiefly for use with the function
single_wedge_spot
"""
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_full = A_tensor(ra, dec)
s_axis = []
kill_timer = 0
for ni in nu_rl:
nu = nu_axis[ni]
I = vis.get_I(source, nu)
s_axis.append(np.array([complex(I), 0, 0, 0]))
for outer_ant in outer_ants.keys():
inner_ants = outer_ants.copy()
del inner_ants[outer_ant]
for inner_ant in inner_ants.keys():
f_layer = []
for ni in nu_rl:
nu = nu_axis[ni]
s = s_axis[ni]
A_n = A_full[ni]
t_layer = []
for ti in t_rl:
t = t_axis[ti]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(outer_ant, inner_ant, r, nu)
A_t = A_n[ti]
next_vista = np.dot(np.dot(A_t, s), phi)
t_layer.append(next_vista)
t_layer = np.array(t_layer)
f_layer.append(t_layer)
inner_ants[inner_ant] = np.array(f_layer)
f_layer = np.array(f_layer)
max_ti = 0
max_V = float('-inf')
for ti in range(len(f_layer[0])):
if f_layer[0, ti, 0] > max_V:
max_ti = ti
max_V = f_layer[0, ti, 0]
print(max_ti)
kill_timer += 1
if kill_timer > 3:
return
outer_ants[outer_ant] = inner_ants
return outer_ants
def single_wedge(source, ignore_I=False, gamma=None):
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
A_full = A_tensor(ra, dec)
s_axis = []
for ni in nu_rl:
nu = nu_axis[ni]
I = vis.get_I(source, nu)
Q = U = V = 0
if gamma is not None:
RM = sample_RM()
polarization = polar_unit * RM / nu**2
Q = gamma * I * np.cos(polarization)
U = gamma * I * np.sin(polarization)
if ignore_I:
I = 0 # important to do this here rather than earlier
s_axis.append(
np.array([complex(I),
complex(Q),
complex(U),
complex(V)]))
for outer_ant in outer_ants.keys():
inner_ants = outer_ants.copy()
del inner_ants[outer_ant]
for inner_ant in inner_ants.keys():
f_layer = []
for ni in nu_rl:
nu = nu_axis[ni]
s = s_axis[ni]
A_n = A_full[ni]
t_layer = []
for ti in t_rl:
t = t_axis[ti]
r = rot.radec2lm(ra, dec, ra0=t)
phi = ant.phase_factor(outer_ant, inner_ant, r, nu)
A_t = A_n[ti]
next_vista = np.dot(np.dot(A_t, s), phi)
t_layer.append(next_vista)
t_layer = np.array(t_layer)
f_layer.append(t_layer)
f_layer = np.array(f_layer)
inner_ants[inner_ant] = f_layer
outer_ants[outer_ant] = inner_ants
return outer_ants
def new_sources_over_time(ant1,
ant2,
list_sources=None,
start=0,
end=2 / 3 * np.pi,
interval=np.pi / 72,
nu=151e6,
interpolator=None):
"""
Return an array containing the visibilities at
different points of time.
@ant1 and @ant2 are indices of antennae, to specify a baseline.
@list_sources is an array of GLEAM catalog objects
(see catalog.py for specifications)
default value translates to the entire
downloaded segment of the catalog.
@start: starting LST of integration [float, radians]
default: 0 hours (cold patch)
@end: terminal LST of integration [float, radians]
default: 8 hours = 2/3 pi (cold patch)
@interval: integration window width [float, radians]
default: 10 minutes = np.pi / 72
@nu frequency in Hertz
"""
if interpolator is None:
raise NotImplementedError("We are" + \
" currently hard-coding interpolators.")
if list_sources is None:
# make a copy to ensure write safety
list_sources = catalog.obj_catalog.copy()
# If the user has entered a single source directly,
# we can automatically standardize the formatting
# by placing it by itself in a list
if type(list_sources) != list:
list_sources = [list_sources]
list_lst = []
lst = start
while lst <= end:
list_lst.append(lst)
lst += interval
list_lst = np.array(list_lst)
list_visibilities = np.zeros((len(list_lst), 4), dtype=np.complex128)
for source in list_sources:
# establish values common to all visibility calculations
I = get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
ra = np.radians(source.ra_angle)
dec = np.radians(source.dec_angle)
for k in range(len(list_lst)):
curr_lst = list_lst[k]
# no input for latitude. Code is no longer general :(
# no input for radians either. We have to rely on the user
# to provide a radian-based interpolator.
az, alt = rot.eq_to_topo(ra, dec, lst=curr_lst, radians=True)
A = interpolator(az, alt)
r = rot.radec2lm(ra, dec, ra0=curr_lst)
phi = ant.phase_factor(ant1, ant2, r, nu)
malformed_result = np.dot(np.dot(A, s), phi)
list_visibilities[k] += malformed_result
# perhaps not necessary. Better safe than sorry:
return list_lst, np.array(list_visibilities)
def cold_tensor(label,
ant1,
ant2,
start_index=0,
end_index=3871,
save_interval=4):
"""
Returns a giant block of visibility sums. Specifications:
cold patch: 0 to 8 hours LST in 30 second increments
full frequency range: 50 to 250 MHz in 1 MHz increments.
The first return value is the x-axis, also known as the first index.
It describes the frequency used for that row.
The second return value is the y-axis, also known as the second index.
It describes the time used for that column.
The third return value is the z-axis, also known as the data block.
It describes the summed visibilities of all ~3000 catalog objects
for a given time and frequency.
"""
global nu_axis
global t_axis
print("Unix time upon function call:", str(time.time()))
nu_axis = np.arange(50e6, 250e6 + MACRO_EPSILON, 1e6)
t_axis = np.arange(0, 2 * np.pi / 3 + MACRO_EPSILON, np.pi / 1440)
v_tensor = np.zeros((len(nu_axis), len(t_axis), 4), dtype=np.complex128)
cleaned = demo.cleaned_list()
percent_interval = 100 / (end_index - start_index + 1)
percent = 0
unsaved_counter = 0
i = start_index
while i < end_index and i < len(cleaned):
next_vt = []
source = cleaned[i]
raI = np.radians(source.ra_angle)
decI = np.radians(source.dec_angle)
AI = A_tensor(raI, decI)
for ni in range(len(nu_axis)):
nu = nu_axis[ni]
next_vt.append([])
I = vis.get_I(source, nu)
s = np.array([complex(I), 0, 0, 0])
A_n = AI[ni]
for ti in range(len(t_axis)):
t = t_axis[ti]
A = A_n[ti]
r = rot.radec2lm(raI, decI, ra0=t)
phi = ant.phase_factor(ant1, ant2, r, nu)
next_vista = np.dot(np.dot(A, s), phi)
next_vt[len(next_vt) - 1].append(next_vista)
v_tensor += np.array(next_vt)
percent += percent_interval
percent_status = str(np.around(percent, 4))
print("Visibility tensor: " + percent_status + \
"% complete (finished i=" + str(i) + ").")
unsaved_counter += 1
if unsaved_counter > save_interval:
np.savez("backup_" + label,
na=nu_axis,
ta=t_axis,
vt=v_tensor,
dying_index=np.array(i))
unsaved_counter = 0
i += 1
np.savez("backup_" + label,
na=nu_axis,
ta=t_axis,
vt=v_tensor,
dying_index=np.array(-1))