def markupsNodes(self):
return {
slicer.vtkMRMLMarkupsAngleNode(): slicer.vtkSlicerAngleWidget(),
slicer.vtkMRMLMarkupsClosedCurveNode(): slicer.vtkSlicerCurveWidget(),
slicer.vtkMRMLMarkupsCurveNode(): slicer.vtkSlicerCurveWidget(),
slicer.vtkMRMLMarkupsFiducialNode(): slicer.vtkSlicerPointsWidget(),
slicer.vtkMRMLMarkupsLineNode(): slicer.vtkSlicerLineWidget(),
slicer.vtkMRMLMarkupsPlaneNode(): slicer.vtkSlicerPlaneWidget(),
slicer.vtkMRMLMarkupsROINode(): slicer.vtkSlicerROIWidget(),
slicer.vtkMRMLMarkupsTestLineNode(): slicer.vtkSlicerTestLineWidget()
}
def testWedgeCut(self):
self.delayDisplay("Starting...")
self.setUp()
fileURL = 'http://slicer.kitware.com/midas3/download/item/426450/MRRobot-Shoulder-MR.nrrd'
filePath = os.path.join(slicer.util.tempDirectory(), 'MRRobot-Shoulder-MR.nrrd')
slicer.util.downloadFile(fileURL, filePath)
success, shoulder = slicer.util.loadVolume(filePath, returnNode=True)
self.delayDisplay("Shoulder downloaded...")
slicer.util.mainWindow().moduleSelector().selectModule('VolumeRendering')
volumeRenderingWidgetRep = slicer.modules.volumerendering.widgetRepresentation()
volumeRenderingWidgetRep.setMRMLVolumeNode(shoulder)
volumeRenderingNode = slicer.mrmlScene.GetFirstNodeByName('VolumeRendering')
volumeRenderingNode.SetVisibility(1)
self.delayDisplay('Volume rendering on')
methodComboBox = slicer.util.findChildren(name='RenderingMethodComboBox')[0]
methodComboBox.currentIndex = methodComboBox.findText('VTK GPU Ray Casting')
self.delayDisplay('GPU Ray Casting on')
endpoints = [ [-162.94, 2.32192, -30.1792], [-144.842, 96.867, -36.8726] ]
markupNode = slicer.mrmlScene.AddNode(slicer.vtkMRMLMarkupsLineNode())
for endpoint in endpoints:
markupNode.AddControlPoint(vtk.vtkVector3d(endpoint))
self.delayDisplay('Line added')
#------------------------------------------------------
# Utility functions to get the position of the first
# fiducial point in the scene and the shader property
# node
#------------------------------------------------------
def GetLineEndpoints():
fn = slicer.util.getNode('vtkMRMLMarkupsLineNode1')
endpoints = []
for n in range(2):
endpoints.append([0,]*3)
fn.GetNthControlPointPosition(n,endpoints[n])
return endpoints
def GetShaderPropertyNode():
return slicer.util.getNode('vtkMRMLShaderPropertyNode1')
#------------------------------------------------------
# Get the shader property node which contains every custom
# shader modifications for every mapper associated with
# the first volume rendering display node
#------------------------------------------------------
displayNode = slicer.util.getNodesByClass('vtkMRMLGPURayCastVolumeRenderingDisplayNode')[0]
shaderPropNode = displayNode.GetOrCreateShaderPropertyNode(slicer.mrmlScene)
shaderProp = shaderPropNode.GetShaderProperty()
# turn off shading so carved region looks reasonable
volumePropertyNode = displayNode.GetVolumePropertyNode()
volumeProperty = volumePropertyNode.GetVolumeProperty()
volumeProperty.ShadeOff()
#------------------------------------------------------
# Declare and initialize custom uniform variables
# used in our shader replacement
#------------------------------------------------------
shaderUniforms = shaderPropNode.GetFragmentUniforms()
shaderUniforms.RemoveAllUniforms()
endpoints = GetLineEndpoints()
shaderUniforms.SetUniform3f("endpoint0",endpoints[0])
shaderUniforms.SetUniform3f("endpoint1",endpoints[1])
shaderUniforms.SetUniformf("coneCutoff",0.8)
#------------------------------------------------------
# Replace the cropping implementation part of the
# raycasting shader to skip everything in the sphere
# defined by endpoints and radius
#------------------------------------------------------
croppingImplShaderCode = """
vec4 texCoordRAS = in_volumeMatrix[0] * in_textureDatasetMatrix[0] * vec4(g_dataPos, 1.);
vec3 samplePoint = texCoordRAS.xyz;
vec3 toSample = normalize(samplePoint - endpoint0);
vec3 toEnd = normalize(endpoint1 - endpoint0);
float onLine = dot(toEnd, toSample);
g_skip = (onLine > coneCutoff);
"""
shaderProp.ClearAllFragmentShaderReplacements()
shaderProp.AddFragmentShaderReplacement("//VTK::Cropping::Impl", True, croppingImplShaderCode, False)
#------------------------------------------------------
# Add a callback when the fiducial moves to adjust
# the endpoints of the carving sphere accordingly
#------------------------------------------------------
def onControlPointMoved():
endpoints = GetLineEndpoints()
propNode = GetShaderPropertyNode()
propNode.GetFragmentUniforms().SetUniform3f("endpoint0",endpoints[0])
propNode.GetFragmentUniforms().SetUniform3f("endpoint1",endpoints[1])
fn = slicer.util.getNode('vtkMRMLMarkupsLineNode1')
fn.AddObserver(fn.PointModifiedEvent, lambda caller,event: onControlPointMoved())
self.delayDisplay("Should be a carved out shoulder now")