def handler(req):
req.content_type = 'text/html'
formdata = util.FieldStorage(req)
formID = formdata.getfirst('FormID')
sid = formdata.getfirst('sid')
cmdID = formdata.getfirst('cmd')
page = None
#XZ: this statement must be put into handler function
mod_python_session = Session.Session(req, timeout=864000, lock=0)
mod_python_session.load()
if sid:
from cmdLine import procPage
reload(procPage)
req.content_type = 'text/html'
procPage.procPage(sid, req)
else:
fd = webqtlFormData(req=req, mod_python_session=mod_python_session, FieldStorage_formdata=formdata)
if formID:
#XZ: Special case. Pay attention to parameters! We can NOT pass 'fd'!
if fd.formID == 'uploadFile':
from base import cookieData
from misc import uploadFilePage
reload(uploadFilePage)
reload(cookieData)
cookies = cookieData.cookieData(Cookie.get_cookies(req)) #new module
req.content_type = 'text/html'
page = uploadFilePage.uploadFilePage(fd, formdata, cookies)
#search
elif fd.formID in ('searchResult','asearchResult'):
from search import SearchResultPage
reload(SearchResultPage)
req.content_type = 'text/html'
page = SearchResultPage.SearchResultPage(fd)
#showTrait
elif fd.formID == 'showDatabase':
from showTrait import ShowTraitPage
reload(ShowTraitPage)
req.content_type = 'text/html'
page = ShowTraitPage.ShowTraitPage(fd)
elif fd.formID == 'showBest':
from showTrait import ShowBestTrait
reload(ShowBestTrait)
req.content_type = 'text/html'
page = ShowBestTrait.ShowBestTrait(fd)
elif fd.formID == 'showProbeInfo':
from showTrait import ShowProbeInfoPage
reload(ShowProbeInfoPage)
page = ShowProbeInfoPage.ShowProbeInfoPage(fd)
req.content_type = 'text/html'
elif fd.formID in ('crossChoice', 'varianceChoice'):
if not fd.submitID:
req.content_type = 'text/html'
req.write('check your page')
elif fd.submitID == 'sample':
from showTrait import testTraitPage # new module
reload(testTraitPage)
page = testTraitPage.testTraitPage()
req.content_type = 'text/html'
else:
from showTrait import DataEditingPage
reload(DataEditingPage)
req.content_type = 'text/html'
page = DataEditingPage.DataEditingPage(fd)
#from Trait Data and Analysis form page
elif fd.formID == 'dataEditing':
if not fd.submitID:
req.content_type = 'text/html'
req.write('check your page')
elif fd.submitID == 'basicStatistics': #Updated Basic Statistics page (pop-up when user hits "update" button in DataEditingPage.py
from basicStatistics import updatedBasicStatisticsPage
reload(updatedBasicStatisticsPage)
req.content_type = 'text/html'
page = updatedBasicStatisticsPage.updatedBasicStatisticsPage(fd)
elif fd.submitID == 'updateRecord':
from updateTrait import DataUpdatePage
reload(DataUpdatePage)
req.content_type = 'text/html'
page=DataUpdatePage.DataUpdatePage(fd)
elif fd.submitID == 'addRecord':
from collection import AddUserInputToSelectionPage
reload(AddUserInputToSelectionPage)
page = AddUserInputToSelectionPage.AddUserInputToSelectionPage(fd)
req.content_type = 'text/html'
elif fd.submitID == 'addPublish':
from submitTrait import AddUserInputToPublishPage
reload(AddUserInputToPublishPage)
req.content_type = 'text/html'
page = AddUserInputToPublishPage.AddUserInputToPublishPage(fd)
elif fd.submitID == 'correlation':
from cmdLine import cmdCorrelationPage
reload(cmdCorrelationPage)
page = cmdCorrelationPage.cmdCorrelationPage(fd)
elif fd.submitID == 'intervalMap':
from cmdLine import cmdIntervalMappingPage
reload(cmdIntervalMappingPage)
page = cmdIntervalMappingPage.cmdIntervalMappingPage(fd)
elif fd.submitID == 'markerRegression':
from cmdLine import cmdMarkerRegressionPage
reload(cmdMarkerRegressionPage)
req.content_type = 'text/html'
page = cmdMarkerRegressionPage.cmdMarkerRegressionPage(fd)
elif fd.submitID == 'directPlot':
from cmdLine import cmdDirectPlotPage
reload(cmdDirectPlotPage)
req.content_type = 'text/html'
page = cmdDirectPlotPage.cmdDirectPlotPage(fd)
elif fd.submitID == 'exportData':
from showTrait import exportPage
reload(exportPage)
req.content_type = 'text/html'
page = exportPage.ExportPage(fd)
elif fd.submitID == 'showAll':
from cmdLine import cmdShowAllPage
reload(cmdShowAllPage)
page = cmdShowAllPage.cmdShowAllPage(fd)
elif fd.submitID == 'showAll2':
from cmdLine import cmdShowAllPage2
reload(cmdShowAllPage2)
page=cmdShowAllPage2.cmdShowAllPage2(fd)
else:
pass
#from marker regression result page
elif fd.formID == 'secondRegression':
if not fd.submitID:
req.content_type = 'text/html'
req.write('check your page')
elif fd.submitID == 'compositeRegression':
req.content_type = 'text/html'
from markerRegression import CompositeMarkerRegressionPage
reload(CompositeMarkerRegressionPage)
page = CompositeMarkerRegressionPage.CompositeMarkerRegressionPage(fd)
elif fd.submitID == 'intervalMap':
from intervalMapping import IntervalMappingPage
reload(IntervalMappingPage)
page = IntervalMappingPage.IntervalMappingPage(fd)
else:
pass
#cmdLine
elif fd.formID == 'showIntMap':
from cmdLine import cmdIntervalMappingPage
reload(cmdIntervalMappingPage)
page = cmdIntervalMappingPage.cmdIntervalMappingPage(fd)
elif fd.formID == 'heatmap':
from cmdLine import cmdHeatmapPage
reload(cmdHeatmapPage)
page = cmdHeatmapPage.cmdHeatmapPage(fd)
elif fd.formID == 'networkGraph':
from cmdLine import cmdNetworkGraphPage
reload(cmdNetworkGraphPage)
page = cmdNetworkGraphPage.cmdNetworkGraphPage(fd)
elif fd.formID == 'compCorr2':
from cmdLine import cmdCompCorrPage
reload(cmdCompCorrPage)
page = cmdCompCorrPage.cmdCompCorrPage(fd)
elif fd.formID == 'calPartialCorrDB':
from cmdLine import cmdPartialCorrelationPage
reload(cmdPartialCorrelationPage)
page = cmdPartialCorrelationPage.cmdPartialCorrelationPage(fd)
#pairScan
elif fd.formID == 'showCategoryGraph':
from pairScan import CategoryGraphPage
reload(CategoryGraphPage)
req.content_type = 'text/html'
page = CategoryGraphPage.CategoryGraphPage(fd)
elif fd.formID == 'pairPlot':
from pairScan import PairPlotPage
reload(PairPlotPage)
req.content_type = 'text/html'
page = PairPlotPage.PairPlotPage(fd)
#compareCorrelates
elif fd.formID == 'compCorr':
from compareCorrelates import MultipleCorrelationPage
reload(MultipleCorrelationPage)
page = MultipleCorrelationPage.MultipleCorrelationPage(fd)
#correlationMatrix
elif fd.formID == 'corMatrix':
from correlationMatrix import CorrelationMatrixPage
reload(CorrelationMatrixPage)
req.content_type = 'text/html'
page = CorrelationMatrixPage.CorrelationMatrixPage(fd)
elif fd.formID=='tissueCorrelation' or fd.formID=='dispMultiSymbolsResult':
from correlationMatrix import TissueCorrelationPage
reload(TissueCorrelationPage)
page = TissueCorrelationPage.TissueCorrelationPage(fd)
elif fd.formID =='dispTissueCorrelationResult':
from cmdLine import cmdTissueCorrelationResultPage
reload (cmdTissueCorrelationResultPage)
page = cmdTissueCorrelationResultPage.cmdTissueCorrelationResultPage(fd)
elif fd.formID=='tissueAbbreviation':
from correlationMatrix import TissueAbbreviationPage
reload(TissueAbbreviationPage)
page = TissueAbbreviationPage.TissueAbbreviationPage(fd)
#collection
elif fd.formID == 'dispSelection':
from collection import DisplaySelectionPage
reload(DisplaySelectionPage)
page = DisplaySelectionPage.DisplaySelectionPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'addToSelection':
from collection import AddToSelectionPage
reload(AddToSelectionPage)
page = AddToSelectionPage.AddToSelectionPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'removeSelection':
from collection import RemoveSelectionPage
reload(RemoveSelectionPage)
page = RemoveSelectionPage.RemoveSelectionPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'exportSelect':
from collection import ExportSelectionPage
reload(ExportSelectionPage)
page = ExportSelectionPage.ExportSelectionPage(fd)
elif fd.formID == 'importSelect':
from collection import ImportSelectionPage
reload(ImportSelectionPage)
page = ImportSelectionPage.ImportSelectionPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'exportSelectionDetailInfo':
from collection import ExportSelectionDetailInfoPage
reload(ExportSelectionDetailInfoPage)
page = ExportSelectionDetailInfoPage.ExportSelectionDetailInfoPage(fd)
elif fd.formID == 'BNW':
from collection import BNWPage
reload(BNWPage)
page = BNWPage.BNWPage(fd)
elif fd.formID == 'batSubmitResult':
from collection import BatchSubmitSelectionPage
reload(BatchSubmitSelectionPage)
page = BatchSubmitSelectionPage.BatchSubmitSelectionPage(fd)
req.content_type = 'text/html'
#user
elif fd.formID == 'userLogin':
from user import userLogin
reload(userLogin)
page = userLogin.userLogin(fd)
req.content_type = 'text/html'
elif fd.formID == 'userLogoff':
from user import userLogoff
reload(userLogoff)
page = userLogoff.userLogoff(fd)
req.content_type = 'text/html'
elif fd.formID == 'userPasswd':
from user import userPasswd
reload(userPasswd)
page = userPasswd.userPasswd(fd)
req.content_type = 'text/html'
#submitTrait
elif fd.formID == 'pre_dataEditing':
from submitTrait import VarianceChoicePage
reload(VarianceChoicePage)
page = VarianceChoicePage.VarianceChoicePage(fd)
req.content_type = 'text/html'
elif fd.formID == 'batSubmit':
from submitTrait import BatchSubmitPage
reload(BatchSubmitPage)
req.content_type = 'text/html'
page = BatchSubmitPage.BatchSubmitPage(fd)
#misc
elif fd.formID == 'editHtml':
from misc import editHtmlPage
reload(editHtmlPage)
req.content_type = 'text/html'
page = editHtmlPage.editHtmlPage(fd)
#genomeGraph
elif fd.formID == 'transciptMapping':
from genomeGraph import cmdGenomeScanPage
reload(cmdGenomeScanPage)
req.content_type = 'text/html'
page = cmdGenomeScanPage.cmdGenomeScanPage(fd)
elif fd.formID == 'genAllDbResult':
from genomeGraph import genAllDbResultPage
reload(genAllDbResultPage)
page = genAllDbResultPage.genAllDbResultPage(fd)
#geneWiki
elif fd.formID == 'geneWiki':
from geneWiki import AddGeneRIFPage
reload(AddGeneRIFPage)
page = AddGeneRIFPage.AddGeneRIFPage(fd)
#externalResource
elif fd.formID == 'GOTree':
from externalResource import GoTreePage
reload(GoTreePage)
req.content_type = 'text/html'
page = GoTreePage.GoTreePage(fd)
elif fd.formID == 'ODE':
from externalResource import ODEPage
reload(ODEPage)
req.content_type = 'text/html'
page = ODEPage.ODEPage(fd)
elif fd.formID == 'ODEIM':
from externalResource import ODEPageIM
reload(ODEPageIM)
req.content_type = 'text/html'
page = ODEPageIM.ODEPageIM(fd)
elif fd.formID == 'GCAT':
from externalResource import GCATPage
reload(GCATPage)
req.content_type = 'text/html'
page = GCATPage.GCATPage(fd)
#management
elif fd.formID == 'managerMain':
from management import managerMainPage
reload(managerMainPage)
req.content_type = 'text/html'
page = managerMainPage.managerMainPage(fd)
elif fd.formID == 'createUserAccount':
from management import createUserAccountPage
reload(createUserAccountPage)
req.content_type = 'text/html'
page = createUserAccountPage.createUserAccountPage(fd)
elif fd.formID == 'assignUserToDataset':
from management import assignUserToDatasetPage
reload(assignUserToDatasetPage)
req.content_type = 'text/html'
page = assignUserToDatasetPage.assignUserToDatasetPage(fd)
elif fd.formID == 'deletePhenotypeTrait':
from management import deletePhenotypeTraitPage
reload(deletePhenotypeTraitPage)
req.content_type = 'text/html'
page = deletePhenotypeTraitPage.deletePhenotypeTraitPage(fd)
elif fd.formID == 'exportPhenotypeDataset':
from management import exportPhenotypeDatasetPage
reload(exportPhenotypeDatasetPage)
req.content_type = 'text/html'
page = exportPhenotypeDatasetPage.exportPhenotypeDatasetPage(fd)
elif fd.formID == 'editHeaderFooter':
from management import editHeaderFooter
reload(editHeaderFooter)
req.content_type = 'text/html'
page = editHeaderFooter.editHeaderFooter(fd)
elif fd.formID == 'updGeno':
from management import GenoUpdate
reload(GenoUpdate)
req.content_type = 'text/html'
page = GenoUpdate.GenoUpdate(fd)
#correlation
elif fd.formID == 'showCorrelationPlot':
from correlation import PlotCorrelationPage
reload(PlotCorrelationPage)
req.content_type = 'text/html'
page = PlotCorrelationPage.PlotCorrelationPage(fd)
elif fd.formID == 'showCorrelationComparisonPlot':
from correlation import PlotCorrelationComparisonPage
reload(PlotCorrelationComparisonPage)
req.content_type = 'text/html'
page = PlotCorrelationComparisonPage.PlotCorrelationComparisonPage(fd)
elif fd.formID == 'partialCorrInput':
from correlation import PartialCorrInputPage
reload(PartialCorrInputPage)
req.content_type = 'text/html'
page = PartialCorrInputPage.PartialCorrInputPage(fd)
elif fd.formID == 'calPartialCorrTrait':
from correlation import PartialCorrTraitPage
reload(PartialCorrTraitPage)
req.content_type = 'text/html'
page = PartialCorrTraitPage.PartialCorrTraitPage(fd)
#elif fd.formID == 'BNInput':
# from BN import BNInputPage
# reload(BNInputPage)
# req.content_type = 'text/html'
# page = BNInputPage.BNInputPage(fd)
elif fd.formID == 'updateRecord':
from updateTrait import DataUpdatePage
reload(DataUpdatePage)
req.content_type = 'text/html'
page=DataUpdatePage.DataUpdatePage(fd)
#schema
elif fd.formID == 'schemaShowPage':
from schema import ShowSchemaPage
reload(ShowSchemaPage)
req.content_type = 'text/html'
page = ShowSchemaPage.ShowSchemaPage(fd)
elif fd.formID == 'schemaShowComment':
from schema import ShowCommentPage
reload(ShowCommentPage)
req.content_type = 'text/html'
page = ShowCommentPage.ShowCommentPage(fd)
elif fd.formID == 'schemaUpdateComment':
from schema import UpdateCommentPage
reload(UpdateCommentPage)
req.content_type = 'text/html'
page = UpdateCommentPage.UpdateCommentPage(fd)
#snpBrowser
elif fd.formID == 'snpBrowser':
req.content_type = 'text/html'
snpId = fd.formdata.getfirst('snpId')
if snpId:
from snpBrowser import snpDetails
reload(snpDetails)
page = snpDetails.snpDetails(fd, snpId)
else:
from snpBrowser import snpBrowserPage
reload(snpBrowserPage)
page = snpBrowserPage.snpBrowserPage(fd)
elif fd.formID =='SnpBrowserResultPage':
from cmdLine import cmdSnpBrowserResultPage
reload (cmdSnpBrowserResultPage)
page = cmdSnpBrowserResultPage.cmdSnpBrowserResultPage(fd)
#intervalAnalyst
elif fd.formID == 'intervalAnalyst':
from intervalAnalyst import IntervalAnalystPage
reload(IntervalAnalystPage)
req.content_type = 'text/html'
page = IntervalAnalystPage.IntervalAnalystPage(fd)
#AJAX_table
elif fd.formID == 'AJAX_table':
from utility import AJAX_table
reload(AJAX_table)
req.content_type = 'text/html'
req.write(AJAX_table.AJAX_table(fd).write())
elif fd.formID == 'submitSingleTrait':
from submitTrait import CrossChoicePage
reload(CrossChoicePage)
page = CrossChoicePage.CrossChoicePage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharing':
from dataSharing import SharingPage
reload(SharingPage)
page = SharingPage.SharingPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharinginfo':
from dataSharing import SharingInfoPage
reload(SharingInfoPage)
page = SharingInfoPage.SharingInfoPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharinginfoedit':
from dataSharing import SharingInfoEditPage
reload(SharingInfoEditPage)
page = SharingInfoEditPage.SharingInfoEditPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharinginfodelete':
from dataSharing import SharingInfoDeletePage
reload(SharingInfoDeletePage)
page = SharingInfoDeletePage.SharingInfoDeletePage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharinginfoupdate':
from dataSharing import SharingInfoUpdatePage
reload(SharingInfoUpdatePage)
page = SharingInfoUpdatePage.SharingInfoUpdatePage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharingListDataset':
from dataSharing import SharingListDataSetPage
reload(SharingListDataSetPage)
page = SharingListDataSetPage.SharingListDataSetPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'sharinginfoadd':
from dataSharing import SharingInfoAddPage
reload(SharingInfoAddPage)
page = SharingInfoAddPage.SharingInfoAddPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'annotation':
from annotation import AnnotationPage
reload(AnnotationPage)
page = AnnotationPage.AnnotationPage(fd)
req.content_type = 'text/html'
elif fd.formID == 'qtlminer':
from qtlminer import QTLminer
reload(QTLminer)
req.content_type = 'text/html'
page = QTLminer.QTLminer(fd)
elif fd.formID == 'qtlminerresult':
from cmdLine import cmdQTLminerPage
reload (cmdQTLminerPage)
page = cmdQTLminerPage.cmdQTLminerPage(fd)
else:
from search import IndexPage
reload(IndexPage)
page = IndexPage.IndexPage(fd)
req.content_type = 'text/html'
#elif fd.formID == 'updGeno':
# import GenoUpdate
# reload(GenoUpdate)
# req.content_type = 'text/html'
# page=GenoUpdate.GenoUpdate(fd)
#elif fd.formID == 'updStrain':
# import StrainUpdate
# reload(StrainUpdate)
# req.content_type = 'text/html'
# page=StrainUpdate.StrainUpdate(fd)
#elif fd.formID == 'showTextResult':
# import resultPage
# reload(resultPage)
# page = resultPage.ShowTextResult(fd)
#elif fd.formID == 'showStrainInfo':
# import dataPage
# reload(dataPage)
# req.content_type = 'text/html'
# page = dataPage.ShowStrainInfoPage(fd)
#elif fd.formID == 'showImage':
# import dataPage
# reload(dataPage)
# req.content_type = 'text/html'
# page = dataPage.ShowImagePage(fd)
#XZ, 04/29/2009: There is one webpage gn/web/webqtl/blat.html and I have moved it to junk folder. This function is very old and I don't think it is being used.
#elif fd.formID == 'BlatSearch':
# import miscPage
# reload(miscPage)
# page = miscPage.ShowBlatResult(fd)
#elif fd.formID == 'admin':
# import adminPage
# reload(adminPage)
# req.content_type = 'text/html'
# page = adminPage.adminModifyPage(fd)
elif cmdID:
#need to rewrite
cmdID = string.lower(cmdID)
if cmdID in ('get','trait','tra'):
from textUI import cmdGet
reload(cmdGet)
req.content_type = 'text/plain'
req.write(cmdGet.cmdGet(fd).write())
elif cmdID in ('help', 'hlp'):
from textUI import cmdHelp
reload(cmdHelp)
req.content_type = 'text/plain'
req.write(cmdHelp.cmdHelp(fd).write())
elif cmdID in ('correlation','cor','pea','pearson'):
from textUI import cmdCorrelation
reload(cmdCorrelation)
req.content_type = 'text/plain'
req.write(cmdCorrelation.cmdCorrelation(fd).write())
elif cmdID in ('map','marker'):
from textUI import cmdMap
reload(cmdMap)
req.content_type = 'text/plain'
req.write(cmdMap.cmdMap(fd).write())
elif cmdID in ('geno','gen','genotype'):
from textUI import cmdGeno
reload(cmdGeno)
req.content_type = 'text/plain'
req.write(cmdGeno.cmdGeno(fd).write())
elif cmdID in ('interval','int'):
from textUI import cmdInterval
reload(cmdInterval)
req.content_type = 'text/plain'
req.write(cmdInterval.cmdInterval(fd).write())
elif cmdID in ('show','shw'):
from textUI import cmdShowEditing
reload(cmdShowEditing)
req.content_type = 'text/html'
result = cmdShowEditing.cmdShowEditing(fd)
page = result.page
elif cmdID in ('search','sch'):
req.content_type = 'text/plain'
from textUI import cmdSearchGene
reload(cmdSearchGene)
result = cmdSearchGene.cmdSearchGene(fd)
page = result.page
req.write(result.text)
#elif cmdID in ('tst','Test'):
# req.write('Content-type: application/x-download')
# req.write('Content-disposition: attachment; filename=my.txt\n')
# genotype_file = GENODIR + 'AKXD.geno'
# fp = open(genotype_file)
# line = fp.read()
# fp.close()
# req.write(line)
#XZ, 03/03/2009: This fuction must be initiated from URL
#XZ: http://www.genenetwork.org/webqtl/WebQTL.py?cmd=birn&species=mouse&tissue=Hippocampus&ProbeId=1436869_at&Strain=BXD1
#elif cmdID[0:4]=="birn":
# req.content_type = 'text/plain'
# import BIRN
# reload(BIRN)
# result = BIRN.birnSwitch(fd)
# req.write(result.text)
#elif cmdID in ('spear','spearman','spe'):
# import cmdSpearman # new modules
# reload(cmdSpearman)
# req.content_type = 'text/plain'
# req.write(cmdSpearman.cmdSpearman(fd).write())
#elif cmdID in ('snp','track'):
# import cmdSnpTrack # new modules
# reload(cmdSnpTrack)
# req.content_type = 'text/plain'
# req.write(cmdSnpTrack.cmdSnpTrack(fd).write())
else:
req.content_type = 'text/html'
req.write("###Wrong Command")
######## Create first page when called with no formID ########
else:
from search import IndexPage
reload(IndexPage)
page = IndexPage.IndexPage(fd)
req.content_type = 'text/html'
if page:
#send Cookie first
if page.cookie:
for item in page.cookie:
if (item):
modcookie = Cookie.Cookie(item.name, item.value)
modcookie.path = item.path
if item.expire != None:
modcookie.expires = time.time() + item.expire
Cookie.add_cookie(req, modcookie)
#save session
if page.session_data_changed:
for one_key in page.session_data_changed.keys():
mod_python_session[one_key] = page.session_data_changed[one_key]
mod_python_session.save()
req.content_type= page.content_type
#send attachment
if page.redirection:
util.redirect(req, page.redirection)
elif page.content_disposition:
req.headers_out["Content-Disposition"] = page.content_disposition
req.write(page.attachment)
elif page.debug: # for debug
req.write(page.debug)
#send regular content
else:
req.write(page.write())
else:
pass
return apache.OK
page5 = DirectPlotPage.DirectPlotPage(fd) page1.dict['body'] += spacer + str(page5.dict['body']) page1.writeFile(sessionfile+'.html') elif cmdtype == "genreport2": # Generate Report Page v2 spacer = '</TR></Table><Table width=900 cellSpacing=0 cellPadding=5><TR>' from basicStatistics import BasicStatisticsPage_alpha reload(BasicStatisticsPage_alpha) page1 = BasicStatisticsPage_alpha.BasicStatisticsPage_alpha(fd) page1.writeFile(sessionfile+'.html') elif cmdtype == "snpbrowser": from snpBrowser import snpBrowserPage reload(snpBrowserPage) page = snpBrowserPage.snpBrowserPage(fd) page.writeFile(sessionfile+'.html') elif cmdtype == "QTLminer": from qtlminer import QTLminer reload(QTLminer) page = QTLminer.QTLminer(fd) page.writeFile(sessionfile+'.html') elif cmdtype == "tissueCorrelation": from correlationMatrix import TissueCorrelationPage reload(TissueCorrelationPage) page = TissueCorrelationPage.TissueCorrelationPage(fd) page.writeFile(sessionfile+'.html') elif cmdtype == "markerRegression": from markerRegression import MarkerRegressionPage reload(MarkerRegressionPage) page = MarkerRegressionPage.MarkerRegressionPage(fd)