def test_call_empty_drops(self):
rdata = os.path.join(base_dir, "tests/example_sce.RData")
sce_from_rdata = SingleCellExperiment.fromRData(rdata)
tenx = DropletUtils()
assay = sce_from_rdata.assays["counts"]
values = tenx.emptyDrops(assay)
def emptyDrops(counts):
utils = DropletUtils()
cells = utils.emptyDrops(counts)
cells = cells.slots["listData"]
return dict(zip(cells.names, map(list,list(cells))))