Python test_sort_tetrode примеры использования

Пример #1

def main():
    # I force using singularity for kilosort2 because on my computer, when docker tries to use gpu it messes up nvidia-container-cli and I need to restart the computer
    import os
    os.environ['HITHER_USE_SINGULARITY'] = 'TRUE'
    srcdir = os.path.dirname(os.path.realpath(__file__))
    os.environ['KILOSORT2_PATH'] = os.path.join(srcdir, '..', '..', 'spikeforest2', 'sorters', 'kilosort2', 'matlab', 'Kilosort2')
    test_sort_tetrode(sorter_name='kilosort2', min_avg_accuracy=0.15, container=None)

Пример #2

Файл: test_kilosort2_tetrode_parallel.py Проект: mhhennig/spikeforest2

def main():
    # I force using singularity for kilosort2 because on my computer, when docker tries to use gpu it messes up nvidia-container-cli and I need to restart the computer
    import os
    os.environ['HITHER_USE_SINGULARITY'] = 'TRUE'
    test_sort_tetrode(sorter_name='kilosort2',
                      min_avg_accuracy=0.15,
                      num_jobs=2,
                      job_handler=hither.ParallelJobHandler(2))

Пример #3

def main():
    import os

    os.environ['HITHER_USE_SINGULARITY'] = 'TRUE'
    container = 'default'

    test_sort_tetrode(sorter_name='jrclust',
                      min_avg_accuracy=0.25,
                      container=container)

Пример #4

Файл: test_kilosort2_tetrode_slurm_1job.py Проект: samuelgarcia/spikeforest2

def main():
    # I force using singularity for kilosort2 because on my computer, when docker tries to use gpu it messes up nvidia-container-cli and I need to restart the computer
    import os
    os.environ['HITHER_USE_SINGULARITY'] = 'TRUE'
    jh = hither.SlurmJobHandler(
        working_dir='tmp_slurm',
        num_workers_per_batch=2,
        num_cores_per_job=2,
        use_slurm=True,
        additional_srun_opts=['-p gpu', '--gres=gpu:v100-32gb:1']
    )
    test_sort_tetrode(sorter_name='kilosort2', min_avg_accuracy=0.15, num_jobs=1, job_handler=jh)

Пример #5

def main():
    test_sort_tetrode(sorter_name='spykingcircus', min_avg_accuracy=0.15)

Пример #6

def main():
    test_sort_tetrode(sorter_name='herdingspikes2', min_avg_accuracy=0.1)

Пример #7

Файл: test_klusta_tetrode.py Проект: piyushd26/spikeforest2

def main():
    test_sort_tetrode(sorter_name='klusta', min_avg_accuracy=0.2)

Пример #8

Файл: test_mountainsort4_tetrode.py Проект: samuelgarcia/spikeforest2

def main():
    test_sort_tetrode(sorter_name='mountainsort4', min_avg_accuracy=0.4)

Пример #9

def main():
    os.environ['HITHER_USE_SINGULARITY'] = 'TRUE'
    test_sort_tetrode(sorter_name='tridesclous', min_avg_accuracy=0.05)

Пример #10

Файл: test_ironclust_tetrode.py Проект: samuelgarcia/spikeforest2

def main():
    test_sort_tetrode(sorter_name='ironclust', min_avg_accuracy=0.4)

Пример #11

Файл: test_tridesclous_tetrode.py Проект: samuelgarcia/spikeforest2

def main():
    test_sort_tetrode(sorter_name='tridesclous', min_avg_accuracy=0.05)