def main(argv=None):
"""
Main function
:param argv:
:return:
"""
parser = get_parser()
arguments = parser.parse_args(argv if argv else ['--help'])
verbose = arguments.v
set_global_loglevel(verbose=verbose)
# initialize ImageCropper
cropper = ImageCropper(Image(arguments.i))
cropper.verbose = verbose
# Switch across cropping methods
if arguments.g:
cropper.get_bbox_from_gui()
elif arguments.m:
cropper.get_bbox_from_mask(Image(arguments.m))
elif arguments.ref:
cropper.get_bbox_from_ref(Image(arguments.ref))
else:
cropper.get_bbox_from_minmax(
BoundingBox(arguments.xmin, arguments.xmax,
arguments.ymin, arguments.ymax,
arguments.zmin, arguments.zmax)
)
# Crop image
img_crop = cropper.crop(background=arguments.b)
# Write cropped image to file
if arguments.o is None:
fname_out = add_suffix(arguments.i, '_crop')
else:
fname_out = arguments.o
img_crop.save(fname_out)
display_viewer_syntax([arguments.i, fname_out])
def main(args=None):
"""
Main function
:param args:
:return:
"""
# get parser args
if args is None:
args = None if sys.argv[1:] else ['--help']
parser = get_parser()
arguments = parser.parse_args(args=args)
# initialize ImageCropper
cropper = ImageCropper(Image(arguments.i))
cropper.verbose = arguments.v
init_sct(log_level=cropper.verbose, update=True) # Update log level
# Switch across cropping methods
if arguments.g:
cropper.get_bbox_from_gui()
elif arguments.m:
cropper.get_bbox_from_mask(Image(arguments.m))
elif arguments.ref:
cropper.get_bbox_from_ref(Image(arguments.ref))
else:
cropper.get_bbox_from_minmax(
BoundingBox(arguments.xmin, arguments.xmax, arguments.ymin,
arguments.ymax, arguments.zmin, arguments.zmax))
# Crop image
img_crop = cropper.crop(background=arguments.b)
# Write cropped image to file
if arguments.o is None:
fname_out = sct.add_suffix(arguments.i, '_crop')
else:
fname_out = arguments.o
img_crop.save(fname_out)
sct.display_viewer_syntax([arguments.i, fname_out])
