def test_run_idr():
individual_peaks = glob.glob(os.path.join(peak_dir, 'ctcf_[0-9]_VS_*.gz'))
individual_peaks = map(_copy_file_to_testdir, individual_peaks)
pseudo_peaks = glob.glob(os.path.join(peak_dir, 'ctcf_[0-9]_[0-9]_VS_*.gz'))
pseudo_peaks = map(_copy_file_to_testdir, pseudo_peaks)
pseudo_peaks.sort()
pseudo_peaks = idr.bunch(pseudo_peaks)
pooled_pseudo = glob.glob(os.path.join(peak_dir, 'ctcf_0_pooled_[0-9]_VS_*.gz'))
pooled_pseudo = map(_copy_file_to_testdir, pooled_pseudo)
idr_runner = idr.idr_runner(idr_runner_path)
indiv, pseudo, pool_pseudo = idr.run_idr(individual_peaks, pseudo_peaks,
pooled_pseudo, idr_runner)
assert all(map(idr.file_exists, indiv))
assert all(map(idr.file_exists, list(idr.flatten(pooled_pseudo))))
assert all(map(idr.file_exists, pool_pseudo))
def test_idr_runner():
tmp_peak_files = map(_copy_file_to_testdir, peak_files)
idr_runner = idr.idr_runner(idr_runner_path)
idr_out = idr_runner(tmp_peak_files)
assert idr.file_exists(idr_out)