__license__ = "GPLv3"
__version__ = 1.0
__description__ = "{} is a program developed and maintained by {}. " \
"This program is licensed under the {} license and is " \
"provided 'as-is' without any warranty or indemnification " \
"of any kind.".format(__program__,
__author__,
__license__)
if __name__ == '__main__':
# Get the command line arguments.
CLA = CommandLineArguments(program=__program__,
version=__version__,
description=__description__)
INPUT_DIR_PATH = CLA.get_argument("input_dir_path")
INPUT_SUFFIX = CLA.get_argument("input_suffix")
CELL_COUNTS_PATH = CLA.get_argument("cell_counts_path")
REFERENCE_PROFILE = CLA.get_argument("reference_profile_path")
GENE_INFO_PATH = CLA.get_argument("gene_info_path")
COMBINE = CLA.get_argument("combine")
N_SAMPLES = CLA.get_argument("n_samples")
# Start the program.
PROGRAM = Main(input_path=INPUT_DIR_PATH,
input_suffix=INPUT_SUFFIX,
cell_counts_path=CELL_COUNTS_PATH,
ref_profile_path=REFERENCE_PROFILE,
gene_info_path=GENE_INFO_PATH,
combine=COMBINE,
n_samples=N_SAMPLES)
PROGRAM.start()
