do_conversion(make_strain_starter(bud_session_maker, nex_session_maker),
[Json2Obj(Strain),
Obj2NexDB(nex_session_maker, lambda x: x.query(Strain),
name='convert.from_bud.strain',
delete_untouched=True,
commit=True)])
do_conversion(make_strain_url_starter(nex_session_maker),
[Json2Obj(Strainurl),
Obj2NexDB(nex_session_maker, lambda x: x.query(Strainurl),
name='convert.from_bud.strain.url',
delete_untouched=True,
commit_interval=1000,
already_deleted=clean_up_orphans(nex_session_maker, Strainurl, Url, 'STRAIN'))])
do_conversion(make_disambig_starter(nex_session_maker, Strain, ['id', 'format_name'], 'STRAIN', None),
[Json2Obj(Disambig),
Obj2NexDB(nex_session_maker, lambda x: x.query(Disambig).filter(Disambig.class_type == 'STRAIN'),
name='convert.from_bud.strain.disambig',
delete_untouched=True,
commit=True)])
# ------------------------------------------ Paragraph ------------------------------------------
from src.sgd.model.nex.paragraph import Paragraph, Strainparagraph, ParagraphReference
from src.sgd.convert.from_bud.paragraph import make_strain_paragraph_starter, make_paragraph_reference_starter
do_conversion(make_strain_paragraph_starter(nex_session_maker),
[Json2Obj(Strainparagraph),
Obj2NexDB(nex_session_maker, lambda x: x.query(Strainparagraph),
name='convert.from_bud.paragraph.strain',
delete_untouched=True,
[Json2Obj(Experimentalias),
Obj2NexDB(nex_session_maker, lambda x: x.query(Experimentalias),
name='convert.from_bud.experiment_alias',
delete_untouched=True,
commit=True,
already_deleted=clean_up_orphans(nex_session_maker, Experimentalias, Alias, 'EXPERIMENT'))])
do_conversion(make_experiment_relation_starter(bud_session_maker, nex_session_maker),
[Json2Obj(Experimentrelation),
Obj2NexDB(nex_session_maker, lambda x: x.query(Experimentrelation),
name='convert.from_bud.experiment_relation',
delete_untouched=True,
commit=True,
already_deleted=clean_up_orphans(nex_session_maker, Experimentrelation, Relation, 'EXPERIMENT'))])
do_conversion(make_disambig_starter(nex_session_maker, Strain, ['id', 'format_name'], 'STRAIN', None),
[Json2Obj(Disambig),
Obj2NexDB(nex_session_maker, lambda x: x.query(Disambig).filter(Disambig.class_type == 'STRAIN'),
name='convert.from_bud.strain.disambig',
delete_untouched=True,
commit=True)])
# ------------------------------------------ Basic ------------------------------------------
from src.sgd.model.nex.bioentity import Bioentity, Locus
from src.sgd.model.nex.bioconcept import Bioconcept, Observable, Phenotype, Go, ECNumber
from src.sgd.model.nex.bioitem import Bioitem, Orphanbioitem, Domain, Allele, Chemical, Datasetcolumn, Dataset, BioitemTag, Reservedname, Pathway
from src.sgd.model.nex.auxiliary import Disambig
from src.sgd.model.nex.misc import Tag
from src.sgd.model.nex.evidence import Property, Bioentityproperty, Bioconceptproperty, Bioitemproperty, Chemicalproperty
from src.sgd.convert.from_bud.bioentity import make_locus_starter
from src.sgd.convert.from_bud.bioconcept import make_phenotype_starter, make_go_starter, \
