def demo_3d_run(request):
if 'mode' in request.GET and len(request.GET.get('mode')):
mode = str(request.GET.get('mode')[0])
else:
mode = '1'
job_id = ARG['DEMO_3D_ID_' + mode]
create_HTML_page_wait(job_id, 3)
which_muts = range(ARG['MIN_MUTS'], ARG['MAX_MUTS'] + 1)
is_exclude = ARG['IS_EXCLUDE']
is_single = ARG['IS_SINGLE']
is_fill_WT = ARG['IS_FILLWT']
if mode == '2':
structures = [STR['P4P6_1'], STR['P4P6_2']]
else:
structures = [STR['P4P6']]
is_exclude = (not is_exclude)
is_single = (not is_single)
is_fill_WT = (not is_fill_WT)
job = threading.Thread(target=design_3d_wrapper,
args=(SEQ['P4P6'], structures, SEQ['PRIMER_SET'],
'P4P6_2HP', ARG['OFFSET'], which_muts,
[int(ARG['LIB'])], ARG['NUM_MUT'], is_exclude,
is_single, is_fill_WT, job_id))
job.start()
return result_json(job_id)
def demo_2d_run(request):
job_id = ARG['DEMO_2D_ID']
create_HTML_page_wait(job_id, 2)
which_muts = range(ARG['MIN_MUTS'], ARG['MAX_MUTS'] + 1)
job = threading.Thread(target=design_2d_wrapper,
args=(SEQ['P4P6'], SEQ['PRIMER_SET'], 'P4P6_2HP',
ARG['OFFSET'], which_muts, [int(ARG['LIB'])
], job_id))
job.start()
return result_json(job_id)
def result(request):
if request.method != 'GET': return error403(request)
if 'job_id' not in request.GET: return error400(request)
job_id = request.GET.get('job_id')
if len(job_id) != 16 or (not re.match('[0-9a-fA-F]{16}', job_id)):
return error400(request)
response = result_json(job_id)
response['Access-Control-Allow-Origin'] = request.META.get('HTTP_ORIGIN')
response['Access-Control-Allow-Methods'] = 'GET'
return response
def design_2d_run(request):
if request.method != 'POST': return error400(request)
form = Design2DForm(request.POST)
if form.is_valid():
(sequence, tag) = form_data_clean_common(form.cleaned_data)
(primers, offset, min_muts, max_muts, which_muts,
which_lib) = form_data_clean_2d(form.cleaned_data, sequence)
is_valid = form_check_valid_job(2,
sequence,
primers=primers,
min_muts=min_muts,
max_muts=max_muts)
if isinstance(is_valid, HttpResponse):
return is_valid
else:
primers = is_valid[1]
job_id = random_job_id()
create_HTML_page_wait(job_id, 2)
job_entry = Design2D(date=datetime.now(),
job_id=job_id,
sequence=sequence,
tag=tag,
status='1',
params=simplejson.dumps(
{
'offset': offset,
'min_muts': min_muts,
'max_muts': max_muts,
'which_lib': which_lib
},
sort_keys=True,
indent=' ' * 4),
result=simplejson.dumps({'primer_set': primers},
sort_keys=True,
indent=' ' * 4))
job_entry.save()
job_list_entry = JobIDs(job_id=job_id, type=2, date=datetime.now())
job_list_entry.save()
job = threading.Thread(target=design_2d_wrapper,
args=(sequence, primers, tag, offset,
which_muts, which_lib, job_id))
job.start()
return result_json(job_id)
else:
return HttpResponse(simplejson.dumps({
'error': '00',
'type': 2
},
sort_keys=True,
indent=' ' * 4),
content_type='application/json')
return render(request, PATH.HTML_PATH['design_2d'], {'2d_form': form})
def design_1d_run(request):
if request.method != 'POST': return error400(request)
form = Design1DForm(request.POST)
if form.is_valid():
(sequence, tag) = form_data_clean_common(form.cleaned_data)
(min_Tm, max_len, min_len, num_primers, is_num_primers, is_check_t7) = form_data_clean_1d(form.cleaned_data, sequence)
if is_check_t7: (sequence, _, _) = is_t7_present(sequence)
is_valid = form_check_valid_job(1, sequence, num_primers=num_primers)
if isinstance(is_valid, HttpResponse): return is_valid
job_id = random_job_id()
create_HTML_page_wait(job_id, 1)
job_entry = Design1D(date=datetime.now(), job_id=job_id, sequence=sequence, tag=tag, status='1', params=simplejson.dumps({'min_Tm': min_Tm, 'max_len': max_len, 'min_len': min_len, 'num_primers': num_primers, 'is_num_primers': is_num_primers, 'is_check_t7': is_check_t7}, sort_keys=True, indent=' ' * 4), result=simplejson.dumps({}))
job_entry.save()
job_list_entry = JobIDs(job_id=job_id, type=1, date=datetime.now())
job_list_entry.save()
job = threading.Thread(target=design_1d_wrapper, args=(sequence, tag, min_Tm, num_primers, max_len, min_len, is_check_t7, job_id))
job.start()
return result_json(job_id)
else:
return HttpResponse(simplejson.dumps({'error': '00', 'type': 1}, sort_keys=True, indent=' ' * 4), content_type='application/json')
return render(request, PATH.HTML_PATH['design_1d'], {'1d_form': form})
def demo_1d_run(request):
job_id = ARG['DEMO_1D_ID']
create_HTML_page_wait(job_id, 1)
job = threading.Thread(target=design_1d_wrapper, args=(SEQ['P4P6'], 'P4P6_2HP', ARG['MIN_TM'], ARG['NUM_PRM'], ARG['MAX_LEN'], ARG['MIN_LEN'], 1, job_id))
job.start()
return result_json(job_id)