def test_sturm():
mu = [1.0, 0.9, 0.8, 0.7, 0.6, 0.5, 0.4, 0.3, 0.2, 0.1, 0.0]
I = [1, -1, 1, -1, 1, -1, 1, -1, 1, -1, 1]
guess = [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
u, _ = curve_fit(IofMu, mu, I, guess)
map = Map(10)
map[:] = u[1:]
assert map.is_physical() is False
def static(lmax=5, res=300):
"""Plot a static PDF figure."""
# Set up the plot
fig, ax = pl.subplots(lmax + 1, 2 * lmax + 1, figsize=(9, 6))
fig.subplots_adjust(hspace=0)
for axis in ax.flatten():
axis.set_xticks([])
axis.set_yticks([])
axis.spines['top'].set_visible(False)
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(lmax + 1):
ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30,
y=0.38,
fontsize=12)
for j, m in enumerate(range(-lmax, lmax + 1)):
if m < 0:
ax[-1, j].set_xlabel(r"$m {=} \mathrm{-}%d$" % -m,
labelpad=30,
fontsize=11)
else:
ax[-1, j].set_xlabel(r"$m = %d$" % m, labelpad=30, fontsize=11)
# Plot it
x = np.linspace(-1, 1, res)
y = np.linspace(-1, 1, res)
X, Y = np.meshgrid(x, y)
map = Map(lmax)
# Loop over the orders and degrees
for i, l in enumerate(range(lmax + 1)):
for j, m in enumerate(range(-l, l + 1)):
# Offset the index for centered plotting
j += lmax - l
# Compute the spherical harmonic
# with no rotation
map.reset()
map[l, m] = 1
flux = [map(x=X[j], y=Y[j]) for j in range(res)]
# Plot the spherical harmonic
ax[i, j].imshow(flux,
cmap='plasma',
interpolation="none",
origin="lower",
extent=(-1, 1, -1, 1))
ax[i, j].set_xlim(-1.1, 1.1)
ax[i, j].set_ylim(-1.1, 1.1)
# Save!
fig.savefig("ylms.pdf", bbox_inches="tight")
pl.close()
def generate_starry_model(times,
planet_info,
fpfs,
lmax=1,
lambda0=90.0,
Y_1_0=0.5):
''' Instantiate Kepler STARRY model; taken from HD 189733b example'''
# Star
star = kepler.Primary()
# Planet
planet = kepler.Secondary(lmax=lmax)
planet.lambda0 = lambda0 # Mean longitude in degrees at reference time
planet_info.Rp_Rs = planet_info.Rp_Rs or None # for later
if not hasattr(planet_info, 'Rp_Rs') or planet_info.Rp_Rs is None:
print('[WARNING] Rp_Rs does not exist in `planet_info`')
print('Assuming Rp_Rs == sqrt(transit_depth)')
planet_info.Rp_Rs = np.sqrt(planet_info.transit_depth)
planet.r = planet_info.Rp_Rs # planetary radius in stellar radius
planet.L = 0.0 # flux from planet relative to star
planet.inc = planet_info.inclination # orbital inclination
planet.a = planet_info.a_Rs # orbital distance in stellar radius
planet.prot = planet_info.orbital_period # synchronous rotation
planet.porb = planet_info.orbital_period # synchronous rotation
planet.tref = planet_info.transit_time # MJD for transit center time
planet.ecc = planet_info.eccentricity # eccentricity of orbit
planet.Omega = planet_info.omega # argument of the ascending node
# System
system = kepler.System(star, planet)
# Instantiate the system
system = kepler.System(star, planet)
# Specific plottings
# Blue Curve
# NOTE: Prevent negative luminosity on the night side
# Green Curve
# Compute the normalization
map = Map(1)
map[0, 0] = 1
map[1, 0] = Y_1_0
norm = map.flux()
planet.L = fpfs / norm
planet[1, 0] = Y_1_0
system.compute(times)
return 1.0 + planet.lightcurve
def test_occultations():
"""Test occultation light curves."""
# Let's do the l = 3 Earth
map = Map(3)
map.load_image('earth')
# Rotate the map about a random axis
ux = np.random.random()
uy = np.random.random() * (1 - ux)
uz = np.sqrt(1 - ux**2 - uy**2)
axis = [ux, uy, uz]
npts = 30
theta = np.linspace(0, 360, npts, endpoint=False)
# Small occultor
ro = 0.3
xo = np.linspace(-1 - ro - 0.1, 1 + ro + 0.1, npts)
yo = 0
# Analytical and numerical fluxes
map.axis = axis
sF = np.array(map.flux(theta=theta, xo=xo, yo=yo, ro=ro))
nF = np.array(map.flux(theta=theta, xo=xo, yo=yo, ro=ro, numerical=True))
# Compute the (relative) error
error = np.max(np.abs(sF - nF))
# Our numerical integration scheme isn't the most accurate,
# so let's be lenient here!
assert error < 0.03
def test_rotations():
"""Test some elementary rotations."""
# Instantiate
m = Map(1)
m.set_coeff(1, 0, 1)
assert np.allclose(m.y, np.array([0, 0, 1, 0]))
# Rotations and evaluations
m.rotate([1, 0, 0], -90)
assert np.allclose(m.y, np.array([0, 1, 0, 0]))
assert np.allclose(m.p, np.array([0, 0, 0, np.sqrt(3 / (4 * np.pi))]))
m.rotate([0, 0, 1], -90)
assert np.allclose(m.y, np.array([0, 0, 0, 1]))
assert np.allclose(m.p, np.array([0, np.sqrt(3 / (4 * np.pi)), 0, 0]))
m.rotate([0, 1, 0], -90)
assert np.allclose(m.y, np.array([0, 0, 1, 0]))
assert np.allclose(m.p, np.array([0, 0, np.sqrt(3 / (4 * np.pi)), 0]))
def test_phasecurves():
"""Test transit light curve generation."""
# Let's do the l = 3 Earth
m = Map(3)
m.load_image('earth')
# Compute the starry phase curve about a random axis
ux = np.random.random()
uy = np.random.random() * (1 - ux)
uz = np.sqrt(1 - ux**2 - uy**2)
axis = [ux, uy, uz]
theta = np.linspace(0, 360, 25, endpoint=False)
sF = m.flux(axis=axis, theta=theta)
# Compute the flux numerically
nF = [NumericalFlux(m, axis, t) for t in theta]
# Compute the error
error = np.max(np.abs((sF - nF) / sF))
# We're computing the numerical integral at very low precision
# so that this test doesn't take forever, so let's be lenient here!
assert error < 1e-4
def test_small(benchmark=0.1):
"""Small occultor."""
# Let's do the l = 5 Earth
map = Map(5)
map.load_image('earth')
# Occultation properties
npts = 10550
ro = 0.1
xo = np.linspace(-1 - ro, 1 + ro, npts)
yo = np.linspace(-0.1, 0.1, npts)
theta = np.linspace(0, 90, npts)
map.axis = [1, 1, 1] / np.sqrt(3)
# Analytical and numerical fluxes
t = np.zeros(10)
for i in range(10):
tstart = time.time()
map.flux(theta=theta, xo=xo, yo=yo, ro=ro)
t[i] = time.time() - tstart
t = np.mean(t)
# Print
print("Time [Benchmark]: %.3f [%.3f]" % (t, benchmark))
"""Smiley spherical harmonic example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Generate a sample starry map
map = Map(5)
map[5, -3] = -2
map[5, 0] = 2
map[5, 4] = 1
map.axis = [0, 1, 0]
# Render it under consecutive rotations
nax = 9
fig, ax = pl.subplots(1, nax, figsize=(3 * nax, 3))
theta = np.linspace(-90, 90, nax, endpoint=True)
x = np.linspace(-1, 1, 300)
y = np.linspace(-1, 1, 300)
x, y = np.meshgrid(x, y)
for i in range(nax):
I = [map(theta=theta[i], x=x[j], y=y[j]) for j in range(300)]
ax[i].imshow(I, origin="lower", interpolation="none", cmap='plasma')
ax[i].axis('off')
# Save
pl.savefig('smiley.pdf', bbox_inches='tight')
def __init__(self,
lmax=5,
res=300,
dpi=100,
fps=10,
frames=50,
axis=[0., 1., 0.]):
"""Initialize."""
self.lmax = lmax
self.map = Map(lmax)
self.res = res
self.axis = axis
self.frames = frames
x = np.linspace(-1, 1, res)
y = np.linspace(-1, 1, res)
self.X, self.Y = np.meshgrid(x, y)
# Set up the plot
self.fig, self.ax = pl.subplots(self.lmax + 1,
2 * self.lmax + 1,
figsize=(9, 6))
self.fig.subplots_adjust(hspace=0)
for axis in self.ax.flatten():
axis.set_xticks([])
axis.set_yticks([])
axis.spines['top'].set_visible(False)
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(self.lmax + 1):
self.ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30,
y=0.38,
fontsize=12)
for j, m in enumerate(range(-self.lmax, self.lmax + 1)):
self.ax[-1, j].set_xlabel(r"$m = %d$" % m,
labelpad=30,
fontsize=12)
# Loop over the orders and degrees
self.img = []
for i, l in enumerate(range(self.lmax + 1)):
for j, m in enumerate(range(-l, l + 1)):
# Offset the index for centered plotting
j += self.lmax - l
# Compute the spherical harmonic
self.map.reset()
self.map[l, m] = 1
flux = [
self.map(theta=0, x=self.X[j], y=self.Y[j])
for j in range(res)
]
# Plot the spherical harmonic
img = self.ax[i, j].imshow(flux,
cmap='plasma',
interpolation="none",
origin="lower")
self.img.append(img)
# Set up the animation
self.theta = np.linspace(0, 360, frames, endpoint=False)
self.animation = animation.FuncAnimation(self.fig,
self.animate,
frames=self.frames,
interval=50,
repeat=True,
blit=True)
# Save
self.animation.save('ylms.gif', writer='imagemagick', fps=fps, dpi=dpi)
pl.close()
"""Earth spherical harmonic example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Generate a sample starry map
m = Map(10)
m.load_image('earth')
# Start centered at longitude 180 W
m.rotate([0, 1, 0], -180)
# Render it under consecutive rotations
nax = 8
res = 300
fig, ax = pl.subplots(1, nax, figsize=(3 * nax, 3))
theta = np.linspace(0, 360, nax, endpoint=False)
x, y = np.meshgrid(np.linspace(-1, 1, res), np.linspace(-1, 1, res))
for i in range(nax):
# starry functions accept vector arguments, but not matrix arguments,
# so we need to iterate below:
I = [
m.evaluate(axis=[0, 1, 0], theta=-theta[i], x=x[j], y=y[j])
for j in range(res)
]
ax[i].imshow(I, origin="lower", interpolation="none", cmap='plasma')
ax[i].axis('off')
# Save
pl.savefig('earth.pdf', bbox_inches='tight')
ax = pl.subplot2grid((5, nim), (1, 0), colspan=nim, rowspan=4)
theta = np.linspace(0, 360, npts, endpoint=True)
thetanum = np.linspace(0, 360, nptsnum, endpoint=True)
total = np.zeros(npts, dtype=float)
# Compute the phase curves for each continent
base = 0.65
continents = [
'asia.jpg', 'africa.jpg', 'southamerica.jpg', 'northamerica.jpg',
'oceania.jpg', 'europe.jpg', 'antarctica.jpg'
]
labels = [
'Asia', 'Africa', 'S. America', 'N. America', 'Oceania', 'Europe',
'Antarctica'
]
map = Map(10)
map.axis = [0, 1, 0]
for continent, label in zip(continents, labels):
map.load_image(continent)
map.rotate(-180)
F = map.flux(theta=theta)
F -= np.nanmin(F)
ax.plot(theta - 180, F, label=label)
# Compute and plot the total phase curve
map.load_image('earth.jpg')
map.rotate(-180)
total = map.flux(theta=theta)
total /= np.max(total)
ax.plot(theta - 180, total, 'k-', label='Total')
u_quad, _ = curve_fit(IofMu, mu, I, np.zeros(3))
# Now let's fit for the coefficients that fit our model *exactly*
u_exact, _ = curve_fit(IofMu, mu, I, np.zeros_like(mu))
# Plot our two models
mu_hires = np.linspace(0, 1, 100)
ax[1].plot(mu_hires, IofMu(mu_hires, *u_quad), label='Quadratic')
ax[1].plot(mu_hires, IofMu(mu_hires, *u_exact), label='Exact')
# Compute and plot the starry flux in transit for both models
npts = 500
r = 0.1
b = np.linspace(-1.5, 1.5, npts)
for u, label in zip([u_quad, u_exact], ['Quadratic', 'Exact']):
map = Map(len(u) - 1)
for l in range(1, len(u)):
map[l] = u[l]
sF = map.flux(xo=b, yo=0, ro=r)
ax[0].plot(b, sF, '-')
# Appearance
ax[0].set_xlim(-1.5, 1.5)
ax[0].set_ylabel('Normalized flux', fontsize=16)
ax[0].set_xlabel('Impact parameter', fontsize=16)
ax[1].set_ylabel('Specific Intensity', fontsize=16, labelpad=10)
ax[1].legend(loc='lower left')
ax[1].invert_xaxis()
ax[1].set_xlim(1, 0)
ax[1].set_xlabel(r'$\mu$', fontsize=16)
ax = pl.subplot2grid((5, nim), (1, 0), colspan=nim, rowspan=4)
theta = np.linspace(0, 360, npts, endpoint=True)
thetanum = np.linspace(0, 360, nptsnum, endpoint=True)
total = np.zeros(npts, dtype=float)
# Compute the phase curves for each continent
base = 0.65
continents = [
'asia.jpg', 'africa.jpg', 'southamerica.jpg', 'northamerica.jpg',
'oceania.jpg', 'europe.jpg', 'antarctica.jpg'
]
labels = [
'Asia', 'Africa', 'S. America', 'N. America', 'Oceania', 'Europe',
'Antarctica'
]
m = Map(10)
for continent, label in zip(continents, labels):
m.load_image(continent)
m.rotate([0, 1, 0], -180)
F = m.flux(axis=[0, 1, 0], theta=theta)
F -= np.nanmin(F)
ax.plot(theta - 180, F, label=label)
# Compute and plot the total phase curve
m.load_image('earth.jpg')
m.rotate([0, 1, 0], -180)
total = m.flux(axis=[0, 1, 0], theta=theta)
total /= np.max(total)
ax.plot(theta - 180, total, 'k-', label='Total')
# Compute and plot the total phase curve (numerical)
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(lmax + 1):
ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30,
y=0.38,
fontsize=12)
for j, m in enumerate(range(lmax + 1)):
ax[-1, j].set_xlabel(r"$m = %d$" % m, labelpad=30, fontsize=12)
# Rotate about this vector
ux = np.array([1., 0., 0.])
uy = np.array([0., 1., 0.])
map = Map(lmax)
theta = np.linspace(0, 360, nt, endpoint=False)
thetan = np.linspace(0, 360, nn, endpoint=False)
for i, l in enumerate(range(lmax + 1)):
for j, m in enumerate(range(l + 1)):
nnull = 0
for axis, zorder, color in zip([ux, uy], [1, 0], ['C0', 'C1']):
map.reset()
map[0, 0] = 0
map[l, m] = 1
map.axis = axis
flux = map.flux(theta=theta)
ax[i, j].plot(theta, flux, lw=1, zorder=zorder, color=color)
fluxn = map.flux(theta=thetan, numerical=True)
ax[i, j].plot(thetan, fluxn, '.', ms=2, zorder=zorder, color=color)
if np.max(np.abs(flux)) < 1e-10:
axis.set_xticks([])
axis.set_yticks([])
axis.spines['top'].set_visible(False)
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(lmax + 1):
ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30, y=0.38,
fontsize=12)
for j, m in enumerate(range(lmax + 1)):
ax[-1, j].set_xlabel(r"$m = %d$" % m, labelpad=30, fontsize=12)
# Occultation params
map = Map(lmax)
ro = 0.25
xo = np.linspace(-1.5, 1.5, nt)
xon = np.linspace(-1.5, 1.5, nn)
for yo, zorder, color in zip([0.25, 0.75], [1, 0], ['C0', 'C1']):
for i, l in enumerate(range(lmax + 1)):
for j, m in enumerate(range(l + 1)):
map.reset()
map[0, 0] = 0
map[l, m] = 1
flux = map.flux(theta=0, xo=xo, yo=yo, ro=ro)
ax[i, j].plot(xo, flux, lw=1, zorder=zorder, color=color)
fluxn = map.flux(theta=0, xo=xon, yo=yo, ro=ro, numerical=True)
ax[i, j].plot(xon, fluxn, '.', ms=2, zorder=zorder, color=color)
# Hack a legend
"""Earth occultation example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Set up the plot
nim = 12
npts = 100
nptsnum = 10
res = 300
fig = pl.figure(figsize=(12, 5))
ax_im = [pl.subplot2grid((4, nim), (0, n)) for n in range(nim)]
ax_lc = pl.subplot2grid((4, nim), (1, 0), colspan=nim, rowspan=3)
# Instantiate the earth
m = Map(10)
m.load_image('earth')
# Moon params
ro = 0.273
yo = np.linspace(-0.5, 0.5, npts)
yonum = np.linspace(-0.5, 0.5, nptsnum)
xo = np.linspace(-1.5, 1.5, npts)
xonum = np.linspace(-1.5, 1.5, nptsnum)
# Say the occultation occurs over ~1 radian of the Earth's rotation
# That's equal to 24 / (2 * pi) hours
# (Remember, though, that `starry` accepts **DEGREES** as input!)
time = np.linspace(0, 24 / (2 * np.pi), npts)
timenum = np.linspace(0, 24 / (2 * np.pi), nptsnum)
theta0 = 0
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(lmax + 1):
ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30,
y=0.38,
fontsize=12)
for j, m in enumerate(range(lmax + 1)):
ax[-1, j].set_xlabel(r"$m = %d$" % m, labelpad=30, fontsize=12)
# Rotate about this vector
ux = np.array([1., 0., 0.])
uy = np.array([0., 1., 0.])
y = Map(lmax)
theta = np.linspace(0, 360, nt, endpoint=False)
thetan = np.linspace(0, 360, nn, endpoint=False)
for i, l in enumerate(range(lmax + 1)):
for j, m in enumerate(range(l + 1)):
nnull = 0
for axis, zorder, color in zip([ux, uy], [1, 0], ['C0', 'C1']):
y.reset()
y.set_coeff(l, m, 1)
flux = y.flux(axis=axis, theta=theta)
ax[i, j].plot(theta, flux, lw=1, zorder=zorder, color=color)
fluxn = y._flux_numerical(axis=axis, theta=thetan, tol=1e-5)
ax[i, j].plot(thetan, fluxn, '.', ms=2, zorder=zorder, color=color)
if np.max(np.abs(flux)) < 1e-10:
nnull += 1
# If there's no light curve, make sure our plot range
"""Earth occultation example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Set up the plot
nim = 12
npts = 100
nptsnum = 10
res = 300
fig = pl.figure(figsize=(12, 5))
ax_im = [pl.subplot2grid((4, nim), (0, n)) for n in range(nim)]
ax_lc = pl.subplot2grid((4, nim), (1, 0), colspan=nim, rowspan=3)
# Instantiate the earth
map = Map(10)
map.load_image('earth')
map.axis = [0, 1, 0]
# Moon params
ro = 0.273
yo = np.linspace(-0.5, 0.5, npts)
yonum = np.linspace(-0.5, 0.5, nptsnum)
xo = np.linspace(-1.5, 1.5, npts)
xonum = np.linspace(-1.5, 1.5, nptsnum)
# Say the occultation occurs over ~1 radian of the Earth's rotation
# That's equal to 24 / (2 * pi) hours
# (Remember, though, that `starry` accepts **DEGREES** as input!)
time = np.linspace(0, 24 / (2 * np.pi), npts)
timenum = np.linspace(0, 24 / (2 * np.pi), nptsnum)
"""Smiley spherical harmonic example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Generate a sample starry map
m = Map(5)
m.set_coeff(5, -3, -2)
m.set_coeff(5, 0, 2)
m.set_coeff(5, 4, 1)
# Render it under consecutive rotations
nax = 9
fig, ax = pl.subplots(1, nax, figsize=(3 * nax, 3))
theta = np.linspace(-90, 90, nax, endpoint=True)
x = np.linspace(-1, 1, 300)
y = np.linspace(-1, 1, 300)
x, y = np.meshgrid(x, y)
for i in range(nax):
I = [
m.evaluate(axis=[0, 1, 0], theta=theta[i], x=x[j], y=y[j])
for j in range(300)
]
ax[i].imshow(I, origin="lower", interpolation="none", cmap='plasma')
ax[i].axis('off')
# Save
pl.savefig('smiley.pdf', bbox_inches='tight')
axis.set_xticks([])
axis.set_yticks([])
axis.spines['top'].set_visible(False)
axis.spines['right'].set_visible(False)
axis.spines['bottom'].set_visible(False)
axis.spines['left'].set_visible(False)
for l in range(lmax + 1):
ax[l, 0].set_ylabel(r"$l = %d$" % l,
rotation='horizontal',
labelpad=30, y=0.38,
fontsize=12)
for j, m in enumerate(range(lmax + 1)):
ax[-1, j].set_xlabel(r"$m = %d$" % m, labelpad=30, fontsize=12)
# Occultation params
y = Map(lmax)
ro = 0.25
xo = np.linspace(-1.5, 1.5, nt)
xon = np.linspace(-1.5, 1.5, nn)
for yo, zorder, color in zip([0.25, 0.75], [1, 0], ['C0', 'C1']):
for i, l in enumerate(range(lmax + 1)):
for j, m in enumerate(range(l + 1)):
y.reset()
y.set_coeff(l, m, 1)
flux = y.flux(axis=[1, 0, 0], theta=0, xo=xo, yo=yo, ro=ro)
ax[i, j].plot(xo, flux, lw=1, zorder=zorder, color=color)
fluxn = y._flux_numerical(axis=[1, 0, 0], theta=0, xo=xon,
yo=yo, ro=ro, tol=1e-5)
ax[i, j].plot(xon, fluxn, '.', ms=2, zorder=zorder, color=color)
# Hack a legend
"""Earth spherical harmonic example."""
from starry import Map
import matplotlib.pyplot as pl
import numpy as np
# Generate a sample starry map
m = Map(10)
m.load_image('earth')
# Start centered at longitude 180 W
m.axis = [0, 1, 0]
m.rotate(-180)
# Render it under consecutive rotations
nax = 8
res = 300
fig, ax = pl.subplots(1, nax, figsize=(3 * nax, 3))
theta = np.linspace(0, 360, nax, endpoint=False)
x, y = np.meshgrid(np.linspace(-1, 1, res), np.linspace(-1, 1, res))
for i in range(nax):
# starry functions accept vector arguments, but not matrix arguments,
# so we need to iterate below:
I = [m(theta=-theta[i], x=x[j], y=y[j]) for j in range(res)]
ax[i].imshow(I, origin="lower", interpolation="none", cmap='plasma')
ax[i].axis('off')
# Save
pl.savefig('earth.pdf', bbox_inches='tight')