def make_DataAnnPkg_page(c):
pkg_to_Y = stats_utils.make_package_reports(c, 'annotation',
main_page_file,
main_page_title)
out = open(main_page_file, 'w')
stats_utils.write_top_asHTML(out, main_page_title, 'main.css')
out.write('<BODY>\n')
stats_utils.write_topright_links_asHTML(out,
'index.html',
'Download stats for Bioconductor Software packages',
'data-experiment.html',
'Download stats for Bioconductor experiment packages')
out.write('<H1 style="text-align: center;">%s</H1>\n' % main_page_title)
stats_utils.write_timestamp_asHTML(out)
out.write('<P><I>')
out.write('This page monitors Bioconductor annotation package ')
out.write('downloads from http://bioconductor.org/ over the last ')
out.write('12 months. ')
out.write('The number reported next to each package name is the ')
out.write('<B>number of distinct IPs that “hit” the ')
out.write('package over the last 12 months.</B> ')
#out.write('Core packages (i.e. the BiocInstaller package + ')
#out.write('packages that get installed the first time ')
#out.write('<A href="%s">biocLite()</A> is called ' % \
# 'http://bioconductor.org/docs/install/')
#out.write('with no arguments) are reported <B>in bold</B>.')
out.write('</I></P>\n')
out.write('<HR>\n')
# Top 30
out.write('<H2>%s</H2>\n' % 'Top 30')
stats_utils.write_TotalDownloadsPerPkg_TABLE(out, 'annotation',
pkg_to_Y.keys(), pkg_to_Y,
True, 30)
out.write('<HR>\n')
# All annotation packages
out.write('<H2>%s</H2>' % 'All annotation packages')
stats_utils.write_DownloadsPerMonth_TABLE(c, out,
'All annotation packages',
"biocrepo='annotation'",
'all_annotation_packages.png')
stats_utils.write_AlphabeticalIndex(out, 'annotation', pkg_to_Y)
out.write('</BODY>\n')
out.write('</HTML>\n')
out.close()
return
def make_SoftwarePkg_page(c):
pkg_to_Y = stats_utils.make_package_reports(c, 'bioc',
main_page_file,
main_page_title)
out = open(main_page_file, 'w')
stats_utils.write_top_asHTML(out, main_page_title, 'main.css')
out.write('<BODY>\n')
stats_utils.write_topright_links_asHTML(out,
'data-annotation.html',
'Download stats for Bioconductor annotation packages',
'data-experiment.html',
'Download stats for Bioconductor experiment packages')
out.write('<H1 style="text-align: center;">%s</H1>\n' % main_page_title)
stats_utils.write_timestamp_asHTML(out)
out.write('<P><I>')
out.write('This page monitors Bioconductor Software package ')
out.write('downloads from http://bioconductor.org/ over the last ')
out.write('12 months. ')
out.write('The number reported next to each package name is the ')
out.write('<B>number of distinct IPs that “hit” the ')
out.write('package over the last 12 months.</B> ')
out.write('Core packages (i.e. the BiocInstaller package + ')
out.write('packages that get installed the first time ')
out.write('<A href="%s">biocLite()</A> is called ' % \
'http://bioconductor.org/docs/install/')
out.write('with no arguments) are reported <B>in bold</B>.')
out.write('</I></P>\n')
out.write('<HR>\n')
# Top 50
out.write('<H2>%s</H2>\n' % 'Top 50')
stats_utils.write_TotalDownloadsPerPkg_TABLE(out, 'bioc',
pkg_to_Y.keys(), pkg_to_Y,
True, 50)
out.write('<HR>\n')
# All Software packages
out.write('<H2>%s</H2>' % 'All Software packages')
stats_utils.write_DownloadsPerMonth_TABLE(c, out,
'All Software packages',
"biocrepo='bioc'",
'all_bioc_packages.png')
stats_utils.write_AlphabeticalIndex(out, 'bioc', pkg_to_Y)
out.write('</BODY>\n')
out.write('</HTML>\n')
out.close()
return
def make_main_page():
out = open(main_page_file, 'w')
stats_utils.write_top_asHTML(out, main_page_title, 'main.css')
out.write('<BODY>\n')
out.write('<H1 style="text-align: center;">%s</H1>\n' % main_page_title)
out.write('<H2>Global stats</H2>')
title = 'All packages'
barplot_file = 'all_packages.png'
stats_utils.write_DownloadsPerMonth_TABLE(c, out, title,
"package IS NOT NULL",
barplot_file, 700000)
title = 'All Software packages'
barplot_file = 'all_bioc_packages.png'
stats_utils.write_DownloadsPerMonth_TABLE(c, out, title,
"biocrepo='bioc'",
barplot_file, 700000)
title = 'All Annotation, CDF and Probe packages'
barplot_file = 'all_data_annotation_packages.png'
stats_utils.write_DownloadsPerMonth_TABLE(c, out, title,
"biocrepo='annotation'",
barplot_file, 700000)
title = 'All Experiment Packages'
barplot_file = 'all_data_experiment_packages.png'
stats_utils.write_DownloadsPerMonth_TABLE(c, out, title,
"biocrepo='experiment'",
barplot_file, 700000)
out.write('<H2>%s</H2>' % 'Software packages')
pkg_to_Y = stats_utils.make_package_reports(c, 'bioc',
main_page_file,
main_page_title)
stats_utils.write_TotalDownloadsPerPkg_TABLE(out, 'bioc',
pkg_to_Y.keys(), pkg_to_Y)
out.write('<H2>%s</H2>' % 'Annotation, CDF and Probe packages')
pkg_to_Y = stats_utils.make_package_reports(c, 'annotation',
main_page_file,
main_page_title)
stats_utils.write_TotalDownloadsPerPkg_TABLE(out, 'annotation',
pkg_to_Y.keys(), pkg_to_Y)
out.write('<H2>%s</H2>' % 'Experiment packages')
pkg_to_Y = stats_utils.make_package_reports(c, 'experiment',
main_page_file,
main_page_title)
stats_utils.write_TotalDownloadsPerPkg_TABLE(out, 'experiment',
pkg_to_Y.keys(), pkg_to_Y)
out.write('</BODY>\n')
out.write('</HTML>\n')
out.close()
return
def makeDownloadStatsHTML():
os.chdir(biocrepo_dirpath)
stats_utils.make_package_HTML_reports(biocrepo, from_year, to_year,
"../../", index_page_title)
stats_utils.make_biocrepo_HTML_report(biocrepo_page, biocrepo_page_title,
biocrepo, from_year, to_year, "../",
index_page_title)
## ------ Make the index page ------ ##
out = open(os.path.join('..', index_page), 'w')
stats_utils.write_top_asHTML(out, index_page_title, 'main.css')
out.write('<BODY>\n')
stats_utils.write_topright_links_asHTML(
out, 'data-annotation.html', 'Bioconductor annotation packages',
'data-experiment.html', 'Bioconductor experiment packages',
'workflows.html', 'Bioconductor workflow packages')
out.write('<H1 style="text-align: center;">%s</H1>\n' % index_page_title)
stats_utils.write_timestamp_asHTML(out)
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('The number reported next to each package name is the ')
out.write('<I>download score</I>, that is, the average number of ')
out.write('distinct IPs that “hit” the package each month ')
out.write('for the last 12 months (not counting the current month). ')
#out.write('Packages <B>in bold</B> are the default Bioconductor packages ')
#out.write('(i.e. the BiocInstaller package + the packages that get ')
#out.write('installed the first time <A HREF="%s">biocLite()</A> is ' % \
# 'https://bioconductor.org/docs/install/')
#out.write('called with no arguments).')
out.write('</P>\n')
out.write('<HR>\n')
## Top 75.
out.write('<H2>%s</H2>\n' % 'Top 75')
stats_utils.write_HTML_top_packages(out, biocrepo, allpkg_scores_filename,
75)
out.write('<HR>\n')
## All software packages.
out.write('<H2>All %s packages</H2>' % biocrepo_label)
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('All %s package stats in one file: ' % biocrepo_label)
out.write('<A HREF="%s/%s">%s</A>' \
% (biocrepo_subdir, allpkg_stats_filename,
allpkg_stats_filename))
out.write('</P>\n')
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('All %s package download scores in one file: ' \
% biocrepo_label)
out.write('<A HREF="%s/%s">%s</A>' \
% (biocrepo_subdir, allpkg_scores_filename,
allpkg_scores_filename))
out.write('</P>\n')
biocrepo_page_href = '%s/%s' % (biocrepo_subdir, biocrepo_page)
out.write('<P style="text-align: center"><A HREF="%s">%s</A></P>\n' \
% (biocrepo_page_href, 'See ' + biocrepo_page_title))
stats_utils.write_HTML_package_alphabetical_index(out, biocrepo,
allpkg_scores_filename)
out.write('</BODY>\n')
out.write('</HTML>\n')
out.close()
return
def makeDownloadStatsHTML():
os.chdir(biocrepo_dirpath)
stats_utils.make_package_HTML_reports(biocrepo, from_year, to_year,
'../../%s' % index_page,
index_page_title)
stats_utils.make_biocrepo_HTML_report(biocrepo_page, biocrepo_page_title,
biocrepo, from_year, to_year,
'../%s' % index_page,
index_page_title)
## ------ Make the index page ------ ##
out = open(os.path.join('..', index_page), 'w')
stats_utils.write_top_asHTML(out, index_page_title, 'main.css')
out.write('<BODY>\n')
stats_utils.write_topright_links_asHTML(
out, 'index.html', 'Bioconductor software packages',
'data-annotation.html', 'Bioconductor annotation packages',
'data-experiment.html', 'Bioconductor experiment packages')
out.write('<H1 style="text-align: center;">%s</H1>\n' % index_page_title)
stats_utils.write_timestamp_asHTML(out)
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('The number reported next to each package name is the ')
out.write('<I>download score</I>, that is, the average number of ')
out.write('distinct IPs that “hit” the package each month ')
out.write('for the last 12 months (not counting the current month). ')
out.write('</P>\n')
#out.write('<HR>\n')
## Top 15.
#out.write('<H2>%s</H2>\n' % 'Top 15')
#
#stats_utils.write_HTML_top_packages(out, biocrepo,
# allpkg_scores_filename, 15)
#
#out.write('<HR>\n')
## All workflow packages.
#out.write('<H2>All %s packages</H2>' % biocrepo_label)
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('All %s package stats in one file: ' % biocrepo_label)
out.write('<A HREF="%s/%s">%s</A>' \
% (biocrepo_subdir, allpkg_stats_filename,
allpkg_stats_filename))
out.write('</P>\n')
#out.write('<P style="text-align: center">')
out.write('<P>')
out.write('All %s package download scores in one file: ' \
% biocrepo_label)
out.write('<A HREF="%s/%s">%s</A>' \
% (biocrepo_subdir, allpkg_scores_filename,
allpkg_scores_filename))
out.write('</P>\n')
biocrepo_page_href = '%s/%s' % (biocrepo_subdir, biocrepo_page)
out.write('<P style="text-align: center"><A HREF="%s">%s</A></P>\n' \
% (biocrepo_page_href, 'See ' + biocrepo_page_title))
#stats_utils.write_HTML_package_alphabetical_index(out, biocrepo,
# allpkg_scores_filename)
pkg2score = stats_utils.load_pkg2score(allpkg_scores_filename)
pkgs = pkg2score.keys()
stats_utils.write_HTML_package_index(out, biocrepo, pkgs, pkg2score)
out.write('</BODY>\n')
out.write('</HTML>\n')
out.close()
return