def test_gaussian_bounds(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y, bounds={"mean": [1., 1.6], "amplitude": [1.7, 2.3]})
def fit(frequencies, stats, center_freq, width=None, obs_length=None, baseline=0): estimated_amp = stats[np.argmin(np.abs(frequencies - center_freq))] if obs_length is not None: s = fit_sinc(frequencies, stats - baseline, obs_length=obs_length, amp=estimated_amp, mean=center_freq) else: df = frequencies[1] - frequencies[0] if width is None: width = 2 * df s = fit_gaussian(frequencies, stats - baseline, stddev=width, amplitude=estimated_amp, mean=center_freq) return s
def test_gaussian_bounds(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y, bounds={"mean": [1., 1.6], "amplitude": [1.7, 2.3]})
def test_gaussian_fixed(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y, mean=1.3, fixed={"mean": True, "amplitude": False}) assert gs.mean.fixed assert not gs.amplitude.fixed
def test_gaussian_fixed(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y, mean=1.3, fixed={"mean": True, "amplitude": False}) assert gs.mean.fixed assert not gs.amplitude.fixed
def test_gaussian_function(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y) assert np.abs(gs.mean - 1.3) < 0.1 assert np.abs(gs.amplitude - 2) < 0.1 assert np.abs(gs.stddev - 0.7) < 0.1
def test_gaussian_function(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) gs = fit_gaussian(x, y) assert np.abs(gs.mean - 1.3) < 0.1 assert np.abs(gs.amplitude - 2) < 0.1 assert np.abs(gs.stddev - 0.7) < 0.1
def test_gaussian_tied(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) def tiedgaussian(model): mean = model.amplitude / 2 return mean gs = fit_gaussian(x, y, tied={"mean": tiedgaussian}) assert np.abs(gs.mean/gs.amplitude - 0.5) < 0.1
def test_gaussian_tied(): x = np.linspace(-5., 5., 200) y = 2 * np.exp(-0.5 * (x - 1.3)**2 / 0.7**2) y += np.random.normal(0., 0.1, x.shape) def tiedgaussian(model): mean = model.amplitude / 2 return mean gs = fit_gaussian(x, y, tied={"mean": tiedgaussian}) assert np.abs(gs.mean/gs.amplitude - 0.5) < 0.1