def createBogus(self, fname):
outdir = self.scratch + '/results/'
if os.path.exists(outdir) is False:
os.makedirs(outdir)
print('dest: %s/%s' % (outdir, fname))
ret = Call(['cp', 'data/output.contig.fa', '%s/%s' % (outdir, fname)])
print(ret)
def test_missing_land_mask(self):
"""Test attempt to read land_mask with missing land_mask netcdf
file."""
Call(['rm', self.land_path])
msg = 'Land mask file not found.'
with self.assertRaisesRegex(IOError, msg):
Plugin(self.diagnostics, self.directory)
def test_missing_orography(self):
"""Test attempt to read orography with missing orography netcdf
file."""
Call(['rm', self.orography_path])
diagnostics = {}
msg = 'Orography file not found.'
with self.assertRaisesRegex(IOError, msg):
Plugin(diagnostics, self.directory)
def setUp(self):
"""Set up cube """
data = np.array([0, 1, 5, 11, 20, 5, 9, 10, 4,
2, 0, 1, 29, 30, 1, 5, 6, 6]).reshape(2, 1, 3, 3)
self.cube = set_up_cube(data, 'air_temperature', 'K',
realizations=np.array([0, 1]))
self.wxcode = np.array(WX_DICT.keys())
self.wxmeaning = " ".join(WX_DICT.values())
self.data_directory = mkdtemp()
self.nc_file = self.data_directory + '/wxcode.nc'
Call(['touch', self.nc_file])
def tearDown(self):
"""Remove temporary directories created for testing."""
Call(['rm', '-f', os.path.join(self.data_directory, 'test_data.nc')])
Call(['rmdir', self.data_directory])
def tearDown(self):
"""Remove temporary directories created for testing."""
for a_file in self.made_files:
Call(['rm', a_file])
Call(['rmdir', self.data_directory])
def tearDown(self):
"""Remove temporary directories created for testing."""
Call(['rm', '-f', self.filepath])
Call(['rmdir', self.directory])
def call(args):
return Call(args)
def tearDown(self):
"""Remove temporary directories created for testing."""
Call(['rm', self.nc_file])
Call(['rmdir', self.data_directory])
def tearDown(self):
"""Remove temporary directories created for testing."""
Call(['rm', '-f', self.data_directory + '/test_data.nc'])
Call(['rmdir', self.data_directory])
