Gr.copy_positions(Gref)
Gprev = Gr
cumulative_svg = Scene(500, 200, 14)
Gref.svg_reaction(Gr, cumulative_svg)
reaction_svg = Scene(500, 200, 14)
Gl.svg_reaction(Gr, reaction_svg)
last_reaction_list = Gl.get_reaction_list(Gr)
total_reaction_list += last_reaction_list
html_file.write("<br>\n")
html_file.write("ΔG = %.0f kJ/mol" % (delta_G) + "<br>\n")
html_file.write("E(activate) = %.0f kJ/mol" % (activation_energy) + "<br>\n")
html_file.write("<br>\n".join(last_reaction_list) + "<br>\n")
reaction_svg.embed_in_html(html_file, html_path + "/", pathway + "/step%d_reaction" % (i))
cumulative_svg.embed_in_html(html_file, html_path + "/", pathway + "/step%d_cumulative" % (i))
html_file.write("</p>\n")
print >> sys.stderr, "*************** FINISHED *****************"
html_file.close()
# Command to execute to display images.
browser_prog = None
for file in ['C:\Program Files\Safari\Safari.exe', \
'/Applications/Safari.app/Contents/MacOS/Safari']:
if (os.path.isfile(file)):
browser_prog = file
print >> sys.stderr, "Using SVG viewer: %s" % display_prog
break
