def _processTT(self, pagenumber): """ @type pagenumber: integer @param pagenumber: Number of page to parse @return: Complex dataset, please read function description. Extracts various information from 'Pretraced SVG' and 'Traced SVG'. Return complex dataset: 1. 'Pretraced SVG' file DOM object 2. Matrix for transforming from SVG coordinate system to stereotactic coordinate system 3. Bregma coordinate 4. Dataset with information about all text elements (labels). """ # Extract filename corresponding to most advanced version of give slide pretracedFilename = self.fileSelector._getMostAdvancedFilename(pagenumber) svgdom = dom.parse(pretracedFilename) # Parse input fie #XXX Aligning slides to reference coordinates in advance (not used) # due to lack of performance if self.aligner.makeAlignment(svgdom): svgfix.fixSvgImage(svgdom, fixHeader=False)# If there's a need to wasFixed = True # fix image (if alignment print "FIXING" # was made - do it) else: wasFixed = False return svgdom, pretracedFilename, wasFixed
def _processTT(self, pagenumber): """ @type pagenumber: integer @param pagenumber: Number of page to parse @return: Complex dataset, please read function description. Extracts various information from 'Pretraced SVG' and 'Traced SVG'. Return complex dataset: 1. 'Pretraced SVG' file DOM object 2. Matrix for transforming from SVG coordinate system to stereotactic coordinate system 3. Bregma coordinate 4. Dataset with information about all text elements (labels). """ # Extract filename corresponding to most advanced version of give slide pretracedFilename = self.fileSelector._getMostAdvancedFilename( pagenumber) svgdom = dom.parse(pretracedFilename) # Parse input fie #XXX Aligning slides to reference coordinates in advance (not used) # due to lack of performance if self.aligner.makeAlignment(svgdom): svgfix.fixSvgImage(svgdom, fixHeader=False) # If there's a need to wasFixed = True # fix image (if alignment print "FIXING" # was made - do it) else: wasFixed = False return svgdom, pretracedFilename, wasFixed
def _processFromRawSVG(self, pagenumber): """ @type pagenumber: integer @param pagenumber: Number of page to parse @return: Complex dataset, please read function description. Processes SVG files from 'Raw SVG' type to 'Pretraced SVG' status. Returns complex dataset: 1. 'Pretraced SVG' file DOM object 2. Matrix for transforming from SVG coordinate system to stereotactic coordinate system 3. Bregma coordinate 4. Dataset with information about all text elements (labels). Performs processing from rawSVG file status to pretraced status """ # Select filename corresponding with given pagenumber filename = self.fileSelector._getMostAdvancedFilename(pagenumber) svgdom = dom.parse(filename) # Parse input file svg = svgdom.getElementsByTagName('svg')[0] svg.setAttribute('xmlns:bar', "http://www.3dbar.org") svgfix.fixSvgImage(svgdom, pagenumber) # Simplify input file structure (bregma, offsets) = fcoords.processFile( svgdom) # Extracts bregma coordinate and # scalings and offsets for # converting to stereotaxic coordinates matcharrows.DoMatch(svgdom) # Calculate labels coordinates matcharrows.symmetrizeLabels( svgdom, offsets) # Make structures labels symmetric fcoords._indexElements(svgdom) # Assign uniqe id to each SVG element if self.aligner.makeAlignment(svgdom): svgfix.fixSvgImage(svgdom, fixHeader=False) # If there's a need to print "FIXING" # was made - do it) # fix image (if alignment # was made - do it) return svgdom
def _processFromRawSVG(self, pagenumber): """ @type pagenumber: integer @param pagenumber: Number of page to parse @return: Complex dataset, please read function description. Processes SVG files from 'Raw SVG' type to 'Pretraced SVG' status. Returns complex dataset: 1. 'Pretraced SVG' file DOM object 2. Matrix for transforming from SVG coordinate system to stereotactic coordinate system 3. Bregma coordinate 4. Dataset with information about all text elements (labels). Performs processing from rawSVG file status to pretraced status """ # Select filename corresponding with given pagenumber filename = self.fileSelector._getMostAdvancedFilename(pagenumber) svgdom = dom.parse(filename) # Parse input file svg = svgdom.getElementsByTagName('svg')[0] svg.setAttribute('xmlns:bar',"http://www.3dbar.org") svgfix.fixSvgImage(svgdom, pagenumber) # Simplify input file structure (bregma, offsets) = fcoords.processFile(svgdom) # Extracts bregma coordinate and # scalings and offsets for # converting to stereotaxic coordinates matcharrows.DoMatch(svgdom) # Calculate labels coordinates matcharrows.symmetrizeLabels(svgdom, offsets) # Make structures labels symmetric fcoords._indexElements(svgdom) # Assign uniqe id to each SVG element if self.aligner.makeAlignment(svgdom): svgfix.fixSvgImage(svgdom, fixHeader=False)# If there's a need to print "FIXING" # was made - do it) # fix image (if alignment # was made - do it) return svgdom