def add_link(self, parent_id, child_id):
'''Adds a link between a parent and child.'''
url = self.__url + '/rest/parts/' + get_ice_number(parent_id) + \
'/links'
data = {'id': get_ice_number(child_id)}
return _read_resp(
net_utils.post(url, data=json.dumps(data), headers=self.__headers))
def do_blast(self, seq, max_num=1024, sort_field='RELEVANCE'):
'''Performs BLAST search against database.'''
data = {'blastQuery': {'blastProgram': 'BLAST_N',
'sequence': seq.lower()},
'parameters': {'retrieveCount': max_num,
'sortField': sort_field}}
return _read_resp(net_utils.post(self.__url + '/rest/search',
json.dumps(data), self.__headers))
def __get_access_token(self, service, username, psswrd):
'''Gets access token response.'''
return _read_resp(
net_utils.post(self.__url + '/rest' + service,
json.dumps({
'email': username,
'password': psswrd
}), self.__headers))
def add_permission(self, ice_id, group_id, read=True):
'''Adds user permissions to a given ICE entry.'''
url = self.__url + '/rest/parts/' + self.__get_ice_number(ice_id) + \
'/permissions'
data = {'type': 'READ_ENTRY' if read else 'WRITE_ENTRY',
'article': 'GROUP',
'articleId': group_id}
return _read_resp(net_utils.post(url, json.dumps(data),
self.__headers))
def add_permission(self, ice_id, group_number, read=True):
'''Adds user permissions to a given ICE entry.'''
url = self.__url + '/parts/' + self.__get_ice_number(ice_id) + \
'/permissions'
data = {'type': 'READ_ENTRY' if read else 'WRITE_ENTRY',
'article': 'GROUP',
'articleId': group_number}
return _read_resp(net_utils.post(url, json.dumps(data),
self.__headers))
def advanced_search(self, term, entry_type, limit=5):
'''Searches ICE.'''
data = {
'queryString': term,
'entryTypes': [entry_type],
'parameters': {
'sortField': 'RELEVANCE',
'retrieveCount': limit,
}
}
return _read_resp(net_utils.post(self.__url + '/rest/search',
json.dumps(data),
self.__headers))
def __create_entry(self, ice_entry):
'''Creates a new ICE entry in the database.'''
url = self.__url + '/rest/parts'
return _read_resp(
net_utils.post(url, json.dumps(self.__form_metadata(ice_entry)),
self.__headers))
def __create_entry(self, ice_entry):
'''Creates a new ICE entry in the database.'''
url = self.__url + '/rest/parts'
return _read_resp(
net_utils.post(url, json.dumps(self.__form_metadata(ice_entry)),
self.__headers))
def __get_access_token(self, service, username, psswrd):
'''Gets access token response.'''
return _read_resp(net_utils.post(self.__url + '/rest' + service,
json.dumps({'email': username,
'password': psswrd}),
self.__headers))
def do_blast(self, seq):
'''Performs BLAST search against database.'''
data = {'blastQuery': {'blastProgram': 'BLAST_N',
'sequence': seq.lower()}}
return _read_resp(net_utils.post(self.__url + '/rest/search',
json.dumps(data), self.__headers))
