def test_is_id_valid(self):
test(self.cls.is_id_valid)
for i in self.valid_ids:
self.assertTrue(self.handler.is_id_valid(i), "Id %s should be valid." % i)
for i in self.invalid_ids:
self.assertFalse(self.handler.is_id_valid(i), "Id %s should be invalid." % i)
def test_get_file_url(self):
test(self.cls.get_file_url)
for i in self.valid_ids:
loc = self.handler.get_file_url(i)
self.assertTrue(loc.startswith(ConfigManager.dbhandler.cachedir))
for i in self.invalid_ids + self.nonexistent_ids:
self.assertRaises(dbhandler.InvalidID, self.handler.get_file_url, i)
def setUp(self):
self.handler = self.cls()
test(self.cls)
test(self.cls.__init__)
try:
notest(self.cls.is_file_valid)
except AttributeError:
pass
def load_tests(loader, standard_tests, pattern):
""" Add tests created by make_* functions for all structures. Returns a complete TestSuite. """
structures = [
'1asz', '1gax', '1no5', '1pxq', '2dlc', '2lp2', '3ftk', '3g88', '3lgb',
'3m6x', '3npn', '3tk0', '3umy'
]
if fast:
structures = ['3npn', '1no5']
def is_non_abstract_crit(c):
if isinstance(
c, type) and c.__module__ == 'pydesc.contacts' and issubclass(
c, contacts.ContactCriterion) and len(
c.__abstractmethods__) == 0:
aspec = inspect.getargspec(c.__init__)
if len(aspec.args
) == 1 and aspec.varargs is None and aspec.keywords is None:
return True
return False
crit_classes = filter(is_non_abstract_crit, contacts.__dict__.values())
basic = unittest.TestSuite()
for name in structures:
for crit in crit_classes:
basic.addTests(
loader.loadTestsFromTestCase(make_contactbasictest(name,
crit)))
basic.addTests(
loader.loadTestsFromTestCase(
make_contactbasictest(name, contacts.CaCbxContact)))
basic.addTests(loader.loadTestsFromTestCase(make_desctest(name)))
test(contacts.CaCbxSubtractionCriterion)
test(contacts.CaCbxSubtractionCriterion.__init__)
test(contacts.CaCbxSubtractionCriterion.is_in_contact)
# TO these are tested during tests added above while CaCbxContact finction calls CaCbxSubtractionCriterion methods
test(contacts.VectorDistanceCriterion)
test(contacts.VectorDistanceCriterion.__init__)
# TO tested for subclass
basic.addTests(
loader.loadTestsFromTestCase(
make_combcontactbasictest(contacts.ContactsAlternative)))
basic.addTests(
loader.loadTestsFromTestCase(
make_combcontactbasictest(contacts.ContactsConjunction)))
standard_tests.addTests(basic)
return standard_tests
def test_download_file(self):
test(self.cls.download_file)
for (i, ref) in zip(self.valid_ids, self.reference_files):
self.handler.download_file(i)
dwnld = self.handler.get_file_location(i)
with open(dwnld, 'r') as f:
buf1 = f.read()
with open(ref, 'r') as f:
buf2 = f.read()
self.assertEqual(buf1, buf2, "Files %s and %s differ." % (dwnld, ref))
if fast:
break
for i in self.invalid_ids:
self.assertRaises(dbhandler.InvalidID, self.handler.download_file, i)
def test_get_file(self):
test(self.cls.get_file)
for (i, ref) in zip(self.valid_ids, self.reference_files):
dwnld = self.handler.get_file_location(i)
with open(ref, 'r') as f:
buf2 = f.read()
buf1 = self.handler.get_file(i, 1).read()
self.assertEqual(buf1, buf2, "Files %s and %s differ." % (dwnld, ref))
buf1 = self.handler.get_file(i, 2).read()
self.assertEqual(buf1, buf2, "Files %s and %s differ." % (dwnld, ref))
os.remove(dwnld)
self.assertRaises(Exception, self.handler.get_file, i, 2)
buf1 = self.handler.get_file(i, 0).read()
self.assertEqual(buf1, buf2, "Files %s and %s differ." % (dwnld, ref))
os.remove(dwnld)
with open(dwnld, 'w') as f:
f.write('crap')
buf1 = self.handler.get_file(i, 0).read()
self.assertEqual(buf1, 'crap', "Files %s and %s differ." % (dwnld, ref))
buf1 = self.handler.get_file(i, 2).read()
self.assertEqual(buf1, 'crap', "Files %s and %s differ." % (dwnld, ref))
buf1 = self.handler.get_file(i, 1).read()
self.assertEqual(buf1, buf2, "Files %s and %s differ." % (dwnld, ref))
if fast:
break
import pydesc.contacts as contacts
import pydesc.config as config
import pydesc.numberconverter as numberconverter
import tests
from pydesc.warnexcept import WrongMonomerType
config.ConfigManager.warnings_and_exceptions.class_filters.set(
"LocalCopyAccess", "ignore")
syntax_check.module = contacts
fast = False
TestSyntax = syntax_check.module_syntax()
test(contacts.ContactCriterion)
test(contacts.DihedralAngleCriterion)
test(contacts.DihedralAngleCriterion.__init__)
test(contacts.DihedralAngleCriterion.is_in_contact)
test(contacts.HorizontalBisectorDistanceCriterion)
test(contacts.HorizontalBisectorDistanceCriterion.__init__)
test(contacts.HorizontalBisectorDistanceCriterion.is_in_contact)
test(contacts.PointsDistanceCriterion)
test(contacts.PointsDistanceCriterion.__init__)
test(contacts.SetDistanceCriterion)
test(contacts.SetDistanceCriterion.__init__)
test(contacts.SetDistanceCriterion.is_in_contact)
test(contacts.VerticalBisectorDistanceCriterion)
test(contacts.VerticalBisectorDistanceCriterion.__init__)
test(contacts.VerticalBisectorDistanceCriterion.is_in_contact)
test(contacts.CombinedContact)