print('No names file provided!')
print('Type `TaxonNamesResolver.py -h` for help.')
sys.exit()
if not os.path.isfile(args.names):
print('[{0}] could not be found!'.format(args.names))
sys.exit()
print('\n' + description + '\n')
if args.datasource:
datasource = args.datasource
else:
datasource = 'NCBI'
# simple logging, no levels, duplicate to console if verbose
logfile = 'log.txt'
logger = logging.getLogger('')
logger.setLevel(logging.INFO)
loghandler = logging.FileHandler(logfile, 'a')
loghandler.setFormatter(logging.Formatter('%(message)s'))
logger.addHandler(loghandler)
if args.verbose:
console = logging.StreamHandler()
console.setFormatter(logging.Formatter('%(message)s'))
logger.addHandler(console)
# log system info
logSysInfo()
resolver = Resolver(args.names, datasource, args.taxonid)
resolver.main()
resolver.write()
logEndTime()
if not args.verbose:
print('\nComplete\n')
print('No names file provided!')
print('Type `TaxonNamesResolver.py -h` for help.')
sys.exit()
if not os.path.isfile(args.names):
print('[{0}] could not be found!'.format(args.names))
sys.exit()
print('\n' + description + '\n')
if args.datasource:
datasource = args.datasource
else:
datasource = 'NCBI'
# simple logging, no levels, duplicate to console if verbose
logfile = 'log.txt'
logger = logging.getLogger('')
logger.setLevel(logging.INFO)
loghandler = logging.FileHandler(logfile, 'a')
loghandler.setFormatter(logging.Formatter('%(message)s'))
logger.addHandler(loghandler)
if args.verbose:
console = logging.StreamHandler()
console.setFormatter(logging.Formatter('%(message)s'))
logger.addHandler(console)
# log system info
logSysInfo()
resolver = Resolver(args.names, datasource, args.taxonid)
resolver.main()
resolver.write()
logEndTime()
if not args.verbose:
print('\nComplete\n')
