def search():
form = set_query_form()
if form.validate_on_submit():
keys = tp.extend_option(form)
#get the keys the doctor selected
return redirect('/patient_test/%s/%s' % (form.identifier.data,form.disease.data))
return render_template('orientation.html', form=form)
def doctor():
form = set_query_form()
if form.validate_on_submit():
keys = tp.extend_option(form)
#get the keys the doctor selected
forward_args = request.args.to_dict(flat=False)
forward_args['_format'] = 'json'
forwarded_url = 'Patient' + '/' + form.identifier.data
api_url = '/%s?%s'% (forwarded_url, urlencode(forward_args, doseq=True))
api_resp = api_call(api_url)
#print api_resp._content
raw_patient_file = json.dumps(api_resp.json())
resp = requests.get('%s/%s' %(PRIVACY_BASE,form.identifier.data), headers={'Content-Type': 'application/json'})
private_profile = json.loads(json.dumps(resp.json()))
try:
private_policy=[]
for k,v in private_profile['Resource'].items():
private_policy.append(v)
except:
private_policy=[{"Policy":"Nope","Policy_ResourceType":"NULL"}]
cross_loc = TextFilter(form.identifier.data, form.disease.data)
# First scan the observation data to locate specific observation result
cross_loc.get_observation_list()
#Then to locate the genetic info(i.e. Sequence Resource) in the data base
cross_loc.observation_prune()
cross_loc.get_genetic_info()
#print raw_patient_file
#print cross_loc.filtered_Observation
#print cross_loc.correlated_genetic
#print private_profile
#if resp.status_code == 404:
# return STATUS_ERROR
#json_data = pe.retrive_patient_info(keys,private_profile,raw_json_file);
#print cross_loc.filtered_Observation[0]
#private_policy = json.dumps(private_policy)
'''
try:
patient, observation, sequence = pe.retrive_patient_info(keys, private_policy, raw_patient_file, cross_loc.filtered_Observation[0] ,cross_loc.correlated_genetic)
except:
patient, observation, sequence = pe.retrive_patient_info(keys, private_policy, raw_patient_file, json.dumps({"message": "No result"}), cross_loc.correlated_genetic)
'''
#get the masked user info
#query_dict = json.loads(json_data)
#token needed, but now I don't konw how to get it
#user's id still in form.identifier.data
'''
return render_template('query_result.html',
token= 'Found',
json = json.dumps(query_dict,indent=4))
'''
#patient = json.loads(patient)
#print json.dumps(patient)
#print json.dumps(observation,indent= 4)
#print json.dumps(sequence,indent= 4)
print json.dumps(private_policy, indent= 4)
if(len(cross_loc.filtered_Observation)>0):
for observation in cross_loc.filtered_Observation:
resp = requests.get('%s/%s' %(PRIVACY_BASE,observation['id']), headers={'Content-Type': 'application/json'})
private_profile = json.loads(json.dumps(resp.json()))
print private_profile
try:
for k,v in private_profile['Resource'].items():
private_policy.append(v)
except:
pass
for seq in cross_loc.correlated_genetic:
resp = requests.get('%s/%s' %(PRIVACY_BASE,seq['id']), headers={'Content-Type': 'application/json'})
private_profile = json.loads(json.dumps(resp.json()))
try:
for k,v in private_profile['Resource'].items():
private_policy.append(v)
except:
pass
patient, observation,sequences = pe.display(keys, private_policy, raw_patient_file, cross_loc.filtered_Observation ,cross_loc.correlated_genetic)
else:
patient, observation,sequences = pe.display(keys, private_policy, raw_patient_file, [], cross_loc.correlated_genetic)
#patient,observation = pe.display(selected_keys, private_profile, raw_json_patient,raw_ob,raw_seq)
return render_template('rebuild_show.html',patient_info = patient,observation = observation,sequences = sequences)
#return redirect('/patient_test/%s' % (form.identifier.data))
return render_template('submit.html',
form=form)
