def submit_metadata_file(
client, pg_driver, admin, submitter, cgci_blgsp, data=None):
data = data or DEFAULT_METADATA_FILE
put_cgci_blgsp(client, admin)
data = json.dumps(data)
resp = client.put(BLGSP_PATH, headers=submitter, data=data)
return resp
def submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp):
put_cgci_blgsp(client, admin)
# first submit experiment
data = json.dumps({
'type': 'experiment',
'submitter_id': 'BLGSP-71-06-00019',
'projects': {
'id': 'daa208a7-f57a-562c-a04a-7a7c77542c98'
}
})
resp = client.put(BLGSP_PATH, headers=submitter, data=data)
assert resp.status_code == 200, resp.data
def submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp):
put_cgci_blgsp(client, admin)
# first submit experiment
data = json.dumps({
"type": "experiment",
"submitter_id": "BLGSP-71-06-00019",
"projects": {
"id": "daa208a7-f57a-562c-a04a-7a7c77542c98"
},
})
resp = client.put(BLGSP_PATH, headers=submitter, data=data)
assert resp.status_code == 200, resp.data
def submit_metadata_file(client,
pg_driver,
admin,
submitter,
cgci_blgsp,
data=None,
format="json"):
data = data or DEFAULT_METADATA_FILE
headers = submitter
put_cgci_blgsp(client, admin)
if format == "tsv":
headers["Content-Type"] = "text/tsv"
elif format == "csv":
headers["Content-Type"] = "text/csv"
else: # json
data = json.dumps(data)
resp = client.put(BLGSP_PATH, headers=headers, data=data)
return resp
