def test_rename_cuts(self):
with tempfile.TemporaryDirectory() as tmp_dir:
path = Path(tmp_dir, self.mesu_folder)
mesu = Measurement(
mo.get_request(),
path / f"foo.info",
name="foo",
measurement_setting_file_name=self.settings_file,
save_on_creation=False,
enable_logging=False)
mesu.create_folder_structure(path)
mesu.to_file()
cuts = ["foo.H.0.0.cut", "foo.He.0.0.cut"]
for cut in cuts:
fp = mesu.get_cuts_dir() / cut
fp.open("w").close()
fp = mesu.get_changes_dir() / cut
fp.open("w").close()
mesu.name = "bar"
mesu.rename_cut_files()
expected = sorted(["bar.H.0.0.cut", "bar.He.0.0.cut"])
self.assertEqual(expected, sorted(os.listdir(mesu.get_cuts_dir())))
self.assertEqual(expected,
sorted(os.listdir(mesu.get_changes_dir())))
def test_serialization(self):
with tempfile.TemporaryDirectory() as tmp_dir:
tmp_dir = Path(tmp_dir)
elem = mo.get_element()
prefix = elem.symbol
re1 = mo.get_recoil_element(symbol=prefix)
re2 = mo.get_recoil_element(name="secondary", symbol=prefix)
o_re_first = mo.get_recoil_element(name="optfirst")
o_re_med = mo.get_recoil_element(name="optmed")
o_re_last = mo.get_recoil_element(name="optlast")
es1 = ElementSimulation(
tmp_dir,
mo.get_request(), [re1, re2],
name_prefix=prefix,
save_on_creation=True,
optimized_fluence=5e12,
optimization_recoils=[o_re_first, o_re_med, o_re_last])
es1.to_file(save_optim_results=True)
mcsimu = es1.get_default_file_path()
es2 = ElementSimulation.from_file(mo.get_request(),
prefix,
tmp_dir,
mcsimu_file=mcsimu,
profile_file=None,
simulation=mo.get_simulation(),
save_on_creation=False)
utils.assert_all_equal("He-Default", es1.get_full_name(),
es2.get_full_name())
self.assertEqual("He-Default",
es1.get_main_recoil().get_full_name(),
es2.get_main_recoil().get_full_name())
utils.assert_all_equal(["Default", "secondary"],
[r.name for r in es1.recoil_elements],
[r.name for r in es2.recoil_elements])
utils.assert_all_equal(5e12, es1.optimized_fluence,
es2.optimized_fluence)
utils.assert_all_equal(["optfirst", "optmed", "optlast"],
[r.name for r in es1.optimization_recoils],
[r.name for r in es2.optimization_recoils])
def test_serialization(self):
with tempfile.TemporaryDirectory() as tmp_dir:
fp = Path(tmp_dir, "test.simu")
sim = Simulation(Path(tmp_dir, "foo.simulation"),
mo.get_request(),
name="foo",
description="bar",
save_on_creation=False,
run=mo.get_run(),
detector=mo.get_detector(),
target=mo.get_target(),
enable_logging=False,
use_request_settings=False)
sim.to_file(fp)
sim2 = Simulation.from_file(mo.get_request(),
fp,
detector=mo.get_detector(),
target=mo.get_target(),
run=mo.get_run(),
enable_logging=False,
save_on_creation=False)
self.assertEqual(sim.name, sim2.name)
self.assertEqual(sim.description, sim2.description)
self.assertEqual(sim.measurement_setting_file_description,
sim2.measurement_setting_file_description)
self.assertEqual(sim.measurement_setting_file_name,
sim2.measurement_setting_file_name)
self.assertEqual(sim.use_request_settings,
sim2.use_request_settings)
self.assertEqual(sim.detector.name, sim2.detector.name)
self.assertEqual(sim.detector.angle_offset,
sim2.detector.angle_offset)
self.assertEqual(sim.target.scattering_element,
sim2.target.scattering_element)
self.assertEqual(sim.target.target_type, sim2.target.target_type)
self.assertEqual(sim.run.fluence, sim2.run.fluence)
def setUp(self):
self.detector = mo.get_detector()
self.request = mo.get_request()
self.eff_files = [
"H.eff", "1H.eff", "1H-comment.eff", "2H.eff", "O.efff"]
self.detector.update_directories(self.DETECTOR_DIR)
for eff in self.eff_files:
fp = self.DETECTOR_DIR / eff
open(fp, "a").close()
self.detector.add_efficiency_file(fp)
def setUp(self):
self.main_rec = mo.get_recoil_element()
self.kwargs = {
"minimum_energy": 42.0,
"minimum_scattering_angle": 17.0,
"minimum_main_scattering_angle": 14.0,
"number_of_preions": 3
}
self.elem_sim = ElementSimulation(Path(tempfile.gettempdir()),
mo.get_request(), [self.main_rec],
save_on_creation=False,
use_default_settings=False,
**self.kwargs)
def test_get_measurement_files(self):
with tempfile.TemporaryDirectory() as tmp_dir:
path = Path(tmp_dir, self.mesu_folder)
mesu = Measurement(mo.get_request(),
path / "mesu.info",
measurement_setting_file_name=self.mesu_name,
save_on_creation=False,
enable_logging=False,
use_request_settings=False)
mesu.create_folder_structure(path)
mesu.to_file()
profile_file, mesu_file, tgt_file, det_file = \
Measurement.find_measurement_files(path)
self.assertEqual(path / f"Default.profile", profile_file)
self.assertEqual(path / f"{self.mesu_name}.measurement", mesu_file)
self.assertEqual(path / f"Default.target", tgt_file)
self.assertEqual(path / "Detector" / f"Default.detector", det_file)
def test_serialization(self):
"""Tests that a deserialized detector has the same attribute values
as the serialized detector did.
"""
with tempfile.TemporaryDirectory() as tmp_dir:
det_file = Path(tmp_dir, "d.detector")
det1 = Detector(det_file,
name="foo",
description="bar",
detector_type=DetectorType.TOF,
virtual_size=(1, 2),
tof_slope=4.4e-10,
tof_offset=2,
angle_slope=3,
angle_offset=4,
timeres=251,
detector_theta=42,
tof_foils=[0, 0],
save_on_creation=False,
foils=[self.unit_foil, self.rect_foil])
det1.to_file(det_file)
det2 = Detector.from_file(det_file,
mo.get_request(),
save_on_creation=False)
self.assertIsNot(det1, det2)
self.assertEqual(det1.name, det2.name)
self.assertEqual(det1.description, det2.description)
self.assertEqual(det1.detector_type, det2.detector_type)
self.assertIsInstance(det2.detector_type, DetectorType)
self.assertEqual(det1.virtual_size, det2.virtual_size)
self.assertEqual(det1.tof_slope, det2.tof_slope)
self.assertEqual(det1.tof_offset, det2.tof_offset)
self.assertEqual(det1.angle_slope, det2.angle_slope)
self.assertEqual(det1.angle_offset, det2.angle_offset)
self.assertEqual(det1.detector_theta, det2.detector_theta)
self.assertEqual(det1.tof_foils, det2.tof_foils)
self.compare_foils(det1.foils, det2.foils)
def test_rename_measurement(self):
with tempfile.TemporaryDirectory() as tmp_dir:
path = Path(tmp_dir)
mesu_path = path / "mesu"
mesu_name = "foo"
measurement = Measurement(mo.get_request(),
path=mesu_path / f"{mesu_name}.info",
name=mesu_name,
save_on_creation=False,
enable_logging=False,
use_request_settings=False)
measurement.create_folder_structure(mesu_path)
measurement.to_file()
utils.assert_folder_structure_equal(
get_extected_folder_structure("mesu", "foo"), path)
measurement.rename("bar")
utils.assert_folder_structure_equal(
get_extected_folder_structure('Measurement_00-bar', "bar"),
path)
def test_serialization(self):
t = Target(name="foo",
modification_time=random.randint(0, 100),
description="bar",
target_type="AFM",
image_size=(random.randint(0, 99), random.randint(0, 99)),
image_file="test",
target_theta=random.random(),
scattering_element=mo.get_element(randomize=True),
layers=[mo.get_layer()])
with tempfile.TemporaryDirectory() as tmp_dir:
tgt_file = Path(tmp_dir, ".target")
t.to_file(tgt_file)
t2 = Target.from_file(tgt_file, mo.get_request())
self.assertIsNot(t, t2)
self.assertEqual(t.name, t2.name)
self.assertEqual(t.description, t2.description)
self.assertEqual(t.layers[0].elements, t2.layers[0].elements)
self.assertEqual(t.image_size, t2.image_size)
self.assertEqual(t.target_theta, t2.target_theta)
self.assertEqual(t.target_type, t2.target_type)
self.assertEqual(t.scattering_element, t2.scattering_element)
def test_folder_structure(self):
with tempfile.TemporaryDirectory() as tmp_dir:
path = Path(tmp_dir, self.mesu_folder)
mesu = Measurement(
mo.get_request(),
path / f"{self.mesu_name}.info",
name=self.mesu_name,
measurement_setting_file_name=self.settings_file,
save_on_creation=False,
enable_logging=False,
use_request_settings=False)
# No files or folders should be created...
utils.assert_folder_structure_equal({}, Path(tmp_dir))
# ... until create_folder_structure is called
mesu.create_folder_structure(path)
utils.assert_folder_structure_equal(self.folder_structure,
Path(tmp_dir))
mesu.to_file()
utils.assert_folder_structure_equal(self.after_to_file,
Path(tmp_dir))