def test_body_part_02(self):
self.assertEqual(test_traits('head, thorax, abdomen'), [{
'body_part': 'head, thorax, abdomen',
'trait': 'body_part',
'start': 0,
'end': 21
}])
def test_antenna_02(self):
self.assertEqual(
test_traits("""
Antennae five-segmented with basal segment wider than long and
much larger than second segment; fourth segment slightly
extended posterolaterally.
"""), [{
'body_part': 'antenna five-segmented',
'trait': 'body_part',
'start': 0,
'end': 23
}, {
'body_part': 'basal segment',
'trait': 'body_part',
'start': 29,
'end': 42
}, {
'body_part': 'second segment',
'trait': 'body_part',
'start': 80,
'end': 94
}, {
'body_part': 'fourth segment',
'trait': 'body_part',
'start': 96,
'end': 110,
'description': 'slightly extended posterolaterally'
}])
def test_body_part_01(self):
self.assertEqual(test_traits('fourth segment'), [{
'body_part': 'fourth segment',
'trait': 'body_part',
'start': 0,
'end': 14
}])
def test_body_part_03(self):
self.assertEqual(test_traits('missing eyes'), [{
'body_part': 'missing eye',
'missing': True,
'trait': 'body_part',
'start': 0,
'end': 12
}])
def test_sci_name_02(self):
self.assertEqual(test_traits('four known species of Abrocomaphthirus'),
[{
'genus': 'Abrocomaphthirus',
'group': 'anoplura',
'trait': 'genus',
'start': 22,
'end': 38
}])
def test_description_04(self):
self.assertEqual(test_traits("""Stuff on head but not on top."""),
[{
'body_part': 'head',
'trait': 'body_part',
'start': 9,
'end': 13,
'description': ['stuff on', 'but not on top']
}])
def test_antenna_05(self):
self.assertEqual(test_traits('Antennal segments 3-5 not fused;'),
[{
'body_part': 'antenna segment 3-5',
'trait': 'body_part',
'start': 0,
'end': 21,
'description': 'not fused'
}])
def test_description_03(self):
self.assertEqual(test_traits("""Stuff on head."""),
[{
'body_part': 'head',
'trait': 'body_part',
'start': 9,
'end': 13,
'description': 'stuff on'
}])
def test_setae_count_03(self):
self.assertEqual(test_traits('with pair of long setae'), [{
'body_part': 'seta',
'present': True,
'seta': 'setae',
'group': 'pair of',
'trait': 'seta_count',
'start': 5,
'end': 23
}])
def test_setae_count_02(self):
self.assertEqual(test_traits('no Dorsal Mesothoracic Setae (DMsS);'),
[{
'count': 0,
'seta': 'dorsal mesothoracic setae',
'body_part': 'seta',
'trait': 'seta_count',
'start': 0,
'end': 35
}])
def test_setae_count_01(self):
self.assertEqual(
test_traits('One long Dorsal Principal Head Seta (DPHS)'),
[{
'count': 1,
'body_part': 'seta',
'seta': 'dorsal principal head seta',
'trait': 'seta_count',
'start': 0,
'end': 42
}])
def test_setae_count_05(self):
self.assertEqual(
test_traits('One long and one tiny seta immediately posterior to'),
[{
'seta': 'seta',
'count': 2,
'body_part': 'seta',
'trait': 'seta_count',
'start': 0,
'end': 26
}])
def test_antenna_04(self):
self.assertEqual(
test_traits("""
third antennal segment modified with anterodorsal projection.
"""), [{
'body_part': 'third antenna segment',
'trait': 'body_part',
'start': 0,
'end': 22,
'description': 'modified with anterodorsal projection'
}])
def test_setae_count_04(self):
self.assertEqual(
test_traits('with 16–18 contiguous curved setae on each side;'),
[{
'low': 16,
'high': 18,
'seta': 'setae',
'group': 'each side',
'body_part': 'seta',
'trait': 'seta_count',
'start': 5,
'end': 47
}])
def test_sci_name_01(self):
self.assertEqual(test_traits('females of L. CLAYTONI sp. nov., .'),
[{
'sex': 'female',
'trait': 'sex',
'start': 0,
'end': 7
}, {
'sci_name': 'L. claytoni',
'group': 'anoplura',
'trait': 'sci_name',
'start': 11,
'end': 22
}])
def test_length_02(self):
self.assertEqual(
test_traits(
'Maximum thorax width, 0.193–0.228 mm (mean, 0.210, n = 4).'),
[{
'body_part': 'thorax',
'n': 4,
'mean': 0.21,
'low': 0.193,
'high': 0.228,
'length_units': 'mm',
'trait': 'max_width',
'start': 0,
'end': 57
}])
def test_length_01(self):
self.assertEqual(
test_traits(
'Total body length: 0.99–1.16 mm; mean, 1.09 mm (n = 4).'),
[{
'n': 4,
'mean': 1.09,
'mean_units': 'mm',
'body_part': 'body',
'low': 0.99,
'high': 1.16,
'length_units': 'mm',
'trait': 'total_length',
'start': 0,
'end': 54
}])
def test_max_width_01(self):
self.assertEqual(
test_traits(
'Maximum head width, 0.150–0.163 mm (mean, 0.17 mm, n = 4).'),
[{
'n': 4,
'mean': 0.17,
'mean_units': 'mm',
'low': 0.150,
'high': 0.163,
'length_units': 'mm',
'body_part': 'head',
'trait': 'max_width',
'start': 0,
'end': 57
}])
def test_description_02(self):
self.assertEqual(
test_traits("""
Thorax slightly wider and elongate.
Thoracic sternal plate extended anteriorly.
"""), [{
'body_part': 'thorax',
'trait': 'body_part',
'start': 0,
'end': 6,
'description': 'slightly wider and elongate'
}, {
'body_part': 'thoracic sternal plate',
'trait': 'body_part',
'start': 36,
'end': 58,
'description': 'extended anteriorly'
}])
def test_length_02(self):
self.assertEqual(
test_traits("""
DPTS length 0.137 mm (n = 1) (only one unbroken DPTS present).
"""), [{
'n': 1,
'low': 0.137,
'length_units': 'mm',
'seta_abbrev': 'dorsal principal thoracic seta',
'trait': 'length',
'start': 0,
'end': 28
}, {
'end': 52,
'start': 48,
'trait': 'seta_abbrev',
'seta_abbrev': 'dorsal principal thoracic seta'
}])
def test_sternal_plate_01(self):
self.assertEqual(
test_traits("""
Thoracic sternal plate subrectangular, about 3⫻ as wide as
long; thorax rounded."""),
[{
'body_part': 'thoracic sternal plate',
'trait': 'body_part',
'start': 0,
'end': 22,
'description': 'subrectangular, about 3× as wide as long'
}, {
'body_part': 'thorax',
'trait': 'body_part',
'start': 65,
'end': 71,
'description': 'rounded'
}])
def test_antenna_01(self):
actual = test_traits('Head suboval; antennae unmodified in males;.')
self.assertEqual(actual, [{
'body_part': 'head',
'trait': 'body_part',
'start': 0,
'end': 4,
'description': 'suboval'
}, {
'body_part': 'antenna',
'trait': 'body_part',
'start': 14,
'end': 22,
'description': 'unmodified in males'
}, {
'sex': 'male',
'trait': 'sex',
'start': 37,
'end': 42
}])
def test_antenna_03(self):
self.assertEqual(
test_traits("""
Head lacking eyes, with 5-segmented antennae which are often
sexually dimorphic.
"""), [{
'body_part': 'head',
'trait': 'body_part',
'start': 0,
'end': 4
}, {
'body_part': 'lacking eye',
'missing': True,
'trait': 'body_part',
'start': 5,
'end': 17
}, {
'body_part': '5-segmented antenna',
'trait': 'body_part',
'start': 24,
'end': 44,
'description': 'which are often sexually dimorphic'
}])
def test_description_01(self):
self.assertEqual(
test_traits("""
Head: More heavily sclerotized along anterior margin;
longer than broad with squarish, slightly convex anterior margin.
"""),
[{
'body_part': 'head',
'trait': 'body_part',
'start': 0,
'end': 4
}, {
'body_part': 'anterior margin',
'trait': 'body_part',
'start': 37,
'end': 52
}, {
'body_part': 'anterior margin',
'trait': 'body_part',
'start': 103,
'end': 118,
'description':
'longer than broad with squarish, slightly convex'
}])
