def test_on_created_run(self, log, event):
with patch('porerefiner.fsevents.Run') as run:
self.assertGreater(len(event.src_path.parts), 2)
note(event.src_path)
run.get_or_create.return_value = (run, True)
_run(Handler(event.src_path.parts[0]).on_created(event))
run.save.assert_called()
def test_on_created_file(self, event):
with patch('porerefiner.fsevents.Run') as run:
with patch('porerefiner.fsevents.File') as file:
self.assertGreater(len(event.src_path.parts), 3)
note(event.src_path)
run.get_or_create.return_value = (run, False)
_run(Handler(event.src_path.parts[0]).on_created(event))
file.create.assert_called()
def test_on_deleted_file(self, event):
_run(Handler(event.src_path.parts[0]).on_created(event))
fi = File.get_or_none(File.path == r(event.src_path))
self.assertIsNotNone(fi) # check test setup correctly
fi.tag("TEST")
fi.ttag("TEST", "TEST", "TEST")
_run(Handler(event.src_path.parts[0]).on_deleted(event))
fi = File.get_or_none(File.path == r(event.src_path))
self.assertIsNone(fi) # should be deleted
def test_tags_arent_deleted_on_run_end(self, tag, run):
run.save()
ta = run.tag(tag)
tta = run.ttag(tag, tag, tag)
_run(fsevents.end_run(run))
fin = models.Tag.get(name="finished")
self.assertIn(ta, run.tags)
self.assertIn(fin, run.tags)
self.assertIn(tta, run.tags)
def test_tags_arent_deleted_on_file_deletion(self, tag, file_event, run):
file, event = file_event
assert file.path == event.src_path
file.save()
models.File.get(file.id)
file.tag(tag)
run.save()
tag = run.tag(tag)
self.assertEqual(len(list(run.tags)), 1)
self.assertEqual(len(list(file.tags)), 1)
_run(Handler(event.src_path.parts[0]).on_deleted(event))
self.assertFalse(
models.File.get_or_none(models.File.path == event.src_path)
) # check file record is gone
self.assertEqual(len(list(run.tags)), 1)
self.assertIn(tag, run.tags)
def test_end_file(self, file=Mock()):
with NamedTemporaryFile() as tfile:
file.path = Path(tfile.name)
_run(end_file(file))
file.save.assert_called()
def test_on_created_flowcell(self, event, reg):
# flow.get_or_create.return_value = (flow, True)
_run(Handler(event.src_path.parent).on_created(event))
reg.assert_called()
def test_submit(self, job_rec, job_code, run):
run.save()
job_rec.run = run
job_rec.save()
_run(job_code.submitter._submit(job_rec))