def test_taps_error(self):
# Test that an error rises if we use taps in outputs_info.
with pytest.raises(RuntimeError):
theano.scan_checkpoints(lambda: None, [], {
"initial": self.A,
"taps": [-2]
})
def setUp(self):
self.k = T.iscalar("k")
self.A = T.vector("A")
result, _ = theano.scan(fn=lambda prior_result, A: prior_result * A,
outputs_info=T.ones_like(self.A),
non_sequences=self.A,
n_steps=self.k)
result_check, _ = theano.scan_checkpoints(
fn=lambda prior_result, A: prior_result * A,
outputs_info=T.ones_like(self.A),
non_sequences=self.A,
n_steps=self.k,
save_every_N=100)
self.result = result[-1]
self.result_check = result_check[-1]
self.grad_A = T.grad(self.result.sum(), self.A)
self.grad_A_check = T.grad(self.result_check.sum(), self.A)
def setUp(self):
self.k = T.iscalar("k")
self.A = T.vector("A")
result, _ = theano.scan(
fn=lambda prior_result, A: prior_result * A,
outputs_info=T.ones_like(self.A),
non_sequences=self.A,
n_steps=self.k)
result_check, _ = theano.scan_checkpoints(
fn=lambda prior_result, A: prior_result * A,
outputs_info=T.ones_like(self.A),
non_sequences=self.A,
n_steps=self.k,
save_every_N=100)
self.result = result[-1]
self.result_check = result_check[-1]
self.grad_A = T.grad(self.result.sum(), self.A)
self.grad_A_check = T.grad(self.result_check.sum(), self.A)
def crf_loss0(uniaries, transition, targets, masks):
"""
compute minus log likelihood of crf as crf loss.
:param transition: Theano 3D tensor
uniary energies of each step. the shape is [batch_size, n_time_steps, num_labels],
:param transition: Theano 2D tensor
pairwise energies of each step. the shape is [num_labels, num_labels],
where the pad label index is at last.
:param targets: Theano 2D tensor
targets in the shape [batch_size, n_time_steps]
:param masks: Theano 2D tensor
masks in the shape [batch_size, n_time_steps]
:return: Theano 1D tensor
an expression for minus log likelihood loss.
"""
assert transition.ndim == 2
assert targets.ndim == 2
assert masks.ndim == 2
assert uniaries.ndim == 3
def inner_function(uniaries_one_step, targets_one_step, mask_one_step,
prior_partition, prev_label, tg_energy, transition):
"""
:param uniaries: [batch_size, t]
:param targets_one_step: [batch_size]
:param prior_partition: [batch_size, t]
:param prev_label: [batch_size]
:param tg_energy: [batch_size]
:param transition: [t, t]
:return:
"""
partition_shuffled = prior_partition.dimshuffle(0, 1, 'x')
uniaries_one_step_shuffled = uniaries_one_step.dimshuffle(0, 'x', 1)
partition_t = T.switch(
mask_one_step.dimshuffle(0, 'x'),
theano_logsumexp(uniaries_one_step_shuffled +
transition.dimshuffle('x', 0, 1) +
partition_shuffled,
axis=1), prior_partition)
tg_energy_t = T.switch(
mask_one_step,
tg_energy + uniaries_one_step[T.arange(uniaries_one_step.shape[0]),
targets_one_step] +
transition[prev_label, targets_one_step], tg_energy)
return [partition_t, targets_one_step, tg_energy_t]
# Input should be provided as (n_batch, n_time_steps, num_labels, num_labels)
# but scan requires the iterable dimension to be first
# So, we need to dimshuffle to (n_time_steps, n_batch, num_labels, num_labels)
uniaries_shuffled = uniaries.dimshuffle(1, 0, 2)
##energies_shuffled = energies.dimshuffle(1, 0, 2, 3)
targets_shuffled = targets.dimshuffle(1, 0)
masks_shuffled = masks.dimshuffle(1, 0)
# initials should be energies_shuffles[0, :, -1, :]
init_label = T.cast(T.fill(uniaries[:, 0, 0], -1), 'int32')
#aa = T.cast(T.fill(uniaries[:,0,:],0), 'float32')
#aa = aa.dimshuffle(0, 'x', 1) + transition.dimshuffle('x', 0, 1)
target_time0 = targets_shuffled[0]
uniary_time0 = uniaries_shuffled[0]
energy_time0 = transition[-1, :-1]
#initials = [uniary_time0[:, :]+ transition[-1, :].dimshuffle('x', 0), target_time0, uniary_time0[T.arange(target_time0.shape[0]),target_time0]+ aa[T.arange(target_time0.shape[0]), init_label, target_time0]]
initials = [
uniary_time0[:, :] + energy_time0.dimshuffle('x', 0), target_time0,
uniary_time0[T.arange(target_time0.shape[0]), target_time0] +
transition[init_label, target_time0]
]
#print (transition[-1, :].dimshuffle('x', 0)).ndim, (transition[init_label, target_time0]).ndim
[partitions, _, target_energies
], _ = theano.scan_checkpoints(fn=inner_function,
outputs_info=initials,
sequences=[
uniaries_shuffled[1:],
targets_shuffled[1:],
masks_shuffled[1:]
],
non_sequences=[transition[:-1, :-1]])
#partition = partitions[-1]
#target_energy = target_energies[-1]
loss = theano_logsumexp(partition, axis=1) - target_energy
return loss