def __init__(self, stream, requester, scenario, parent=None):
"""
Constructor.
:param requester: the user uploading the experiment design
:type requester: :class:`thelma.entities.user.User`
:param scenario: The scenario (experiment metadata types) defines the
mandatory and forbidden parameters for a design rack layout and the
names of the sheets to be parsed.
:type scenario: :class:`thelma.entities.experiment.ExperimentMetadataType`
"""
MoleculeDesignPoolLayoutParserHandler.__init__(self,
stream,
parent=parent)
#: The user uploading the file.
self.requester = requester
#: A :class:`ExperimentMetadataType` supported by this handler subclass.
self.scenario = scenario
#: Transfection parameters that need to be specified in the layout.
self.__mandatory_parameters = None
#: Transfection parameters that must *not* be specified in the layout.
self.__forbidden_parameters = None
#: Stores the presence of parameters (a parameter has to be
#: specified for each non-empty well or not at all).
self.__parameter_presence = dict()
#: The designs racks for the experiment design.
self.__design_racks = []
def __init__(self, stream, requester, scenario, parent=None):
"""
Constructor.
:param requester: the user uploading the experiment design
:type requester: :class:`thelma.entities.user.User`
:param scenario: The scenario (experiment metadata types) defines the
mandatory and forbidden parameters for a design rack layout and the
names of the sheets to be parsed.
:type scenario: :class:`thelma.entities.experiment.ExperimentMetadataType`
"""
MoleculeDesignPoolLayoutParserHandler.__init__(self, stream,
parent=parent)
#: The user uploading the file.
self.requester = requester
#: A :class:`ExperimentMetadataType` supported by this handler subclass.
self.scenario = scenario
#: Transfection parameters that need to be specified in the layout.
self.__mandatory_parameters = None
#: Transfection parameters that must *not* be specified in the layout.
self.__forbidden_parameters = None
#: Stores the presence of parameters (a parameter has to be
#: specified for each non-empty well or not at all).
self.__parameter_presence = dict()
#: The designs racks for the experiment design.
self.__design_racks = []
def _initialize_parser_keys(self):
"""
Initialises floating related aliases within the parser.
"""
MoleculeDesignPoolLayoutParserHandler._initialize_parser_keys(self)
sheet_names = set()
for sheet_name in self.BASIC_SHEET_NAMES: sheet_names.add(sheet_name)
if isinstance(self.scenario, ExperimentMetadataType) and \
self.scenario.id in \
_SCENARIO_PARAMETERS.TRANSFECTION_SHEET_SCENARIOS:
sheet_names.add(self.TRANSFECTION_SHEET_NAME)
self.parser.sheet_names = sheet_names
def _initialize_parser_keys(self):
"""
Initialises floating related aliases within the parser.
"""
MoleculeDesignPoolLayoutParserHandler._initialize_parser_keys(self)
sheet_names = set()
for sheet_name in self.BASIC_SHEET_NAMES:
sheet_names.add(sheet_name)
if isinstance(self.scenario, ExperimentMetadataType) and \
self.scenario.id in \
_SCENARIO_PARAMETERS.TRANSFECTION_SHEET_SCENARIOS:
sheet_names.add(self.TRANSFECTION_SHEET_NAME)
self.parser.sheet_names = sheet_names