def repeat(a, repeats, axis=None):
if axis is None:
if a.ndim == 1:
axis = 0
else:
raise NotImplementedError("Must supply an integer axis value")
if not isinstance(repeats, Integral):
raise NotImplementedError("Only integer valued repeats supported")
if -a.ndim <= axis < 0:
axis += a.ndim
elif not 0 <= axis <= a.ndim - 1:
raise ValueError("axis(=%d) out of bounds" % axis)
if repeats == 0:
return a[tuple(
slice(None) if d != axis else slice(0) for d in range(a.ndim))]
elif repeats == 1:
return a
cchunks = cached_cumsum(a.chunks[axis], initial_zero=True)
slices = []
for c_start, c_stop in sliding_window(2, cchunks):
ls = np.linspace(c_start, c_stop, repeats).round(0)
for ls_start, ls_stop in sliding_window(2, ls):
if ls_start != ls_stop:
slices.append(slice(ls_start, ls_stop))
all_slice = slice(None, None, None)
slices = [
(all_slice, ) * axis + (s, ) + (all_slice, ) * (a.ndim - axis - 1)
for s in slices
]
slabs = [a[slc] for slc in slices]
out = []
for slab in slabs:
chunks = list(slab.chunks)
assert len(chunks[axis]) == 1
chunks[axis] = (chunks[axis][0] * repeats, )
chunks = tuple(chunks)
result = slab.map_blocks(np.repeat,
repeats,
axis=axis,
chunks=chunks,
dtype=slab.dtype)
out.append(result)
return concatenate(out, axis=axis)
async def test_stress_steal(c, s, *workers):
s.validate = False
for w in workers:
w.validate = False
dinc = delayed(slowinc)
L = [delayed(slowinc)(i, delay=0.005) for i in range(100)]
for i in range(5):
L = [
delayed(slowsum)(part, delay=0.005)
for part in sliding_window(5, L)
]
total = delayed(sum)(L)
future = c.compute(total)
while future.status != "finished":
await asyncio.sleep(0.1)
for i in range(3):
a = random.choice(workers)
b = random.choice(workers)
if a is not b:
s.work_steal(a.address, b.address, 0.5)
if not s.processing:
break
async def test_clean_nbytes(c, s, a, b):
L = [delayed(inc)(i) for i in range(10)]
for i in range(5):
L = [delayed(add)(x, y) for x, y in sliding_window(2, L)]
total = delayed(sum)(L)
future = c.compute(total)
await wait(future)
await asyncio.sleep(1)
assert len(a.nbytes) + len(b.nbytes) == 1
def split_at_breaks(array, breaks, axis=0):
""" Split an array into a list of arrays (using slices) at the given breaks
>>> split_at_breaks(np.arange(6), [3, 5])
[array([0, 1, 2]), array([3, 4]), array([5])]
"""
padded_breaks = concat([[None], breaks, [None]])
slices = [slice(i, j) for i, j in sliding_window(2, padded_breaks)]
preslice = (slice(None), ) * axis
split_array = [array[preslice + (s, )] for s in slices]
return split_array
async def test_stress_scatter_death(c, s, *workers):
import random
s.allowed_failures = 1000
np = pytest.importorskip("numpy")
L = await c.scatter([np.random.random(10000) for i in range(len(workers))])
await c.replicate(L, n=2)
adds = [
delayed(slowadd, pure=True)(
random.choice(L),
random.choice(L),
delay=0.05,
dask_key_name="slowadd-1-%d" % i,
) for i in range(50)
]
adds = [
delayed(slowadd, pure=True)(a,
b,
delay=0.02,
dask_key_name="slowadd-2-%d" % i)
for i, (a, b) in enumerate(sliding_window(2, adds))
]
futures = c.compute(adds)
L = adds = None
alive = list(workers)
from distributed.scheduler import logger
for i in range(7):
await asyncio.sleep(0.1)
try:
s.validate_state()
except Exception as c:
logger.exception(c)
if config.get("log-on-err"):
import pdb
pdb.set_trace()
else:
raise
w = random.choice(alive)
await w.close()
alive.remove(w)
with suppress(CancelledError):
await c.gather(futures)
futures = None
async def test_steal_related_tasks(e, s, a, b, c):
futures = e.map(
slowinc, range(20), delay=0.05, workers=a.address, allow_other_workers=True
)
await wait(futures)
nearby = 0
for f1, f2 in sliding_window(2, futures):
if s.who_has[f1.key] == s.who_has[f2.key]:
nearby += 1
assert nearby > 10
async def read(self, deserializers=None):
stream = self.stream
if stream is None:
raise CommClosedError()
fmt = "Q"
fmt_size = struct.calcsize(fmt)
try:
frames_nbytes = await stream.read_bytes(fmt_size)
(frames_nbytes, ) = struct.unpack(fmt, frames_nbytes)
frames = host_array(frames_nbytes)
for i, j in sliding_window(
2,
range(0, frames_nbytes + OPENSSL_MAX_CHUNKSIZE,
OPENSSL_MAX_CHUNKSIZE),
):
chunk = frames[i:j]
chunk_nbytes = len(chunk)
n = await stream.read_into(chunk)
assert n == chunk_nbytes, (n, chunk_nbytes)
except StreamClosedError as e:
self.stream = None
self._closed = True
if not sys.is_finalizing():
convert_stream_closed_error(self, e)
except Exception:
# Some OSError or a another "low-level" exception. We do not really know what
# was already read from the underlying socket, so it is not even safe to retry
# here using the same stream. The only safe thing to do is to abort.
# (See also GitHub #4133).
self.abort()
raise
else:
try:
frames = unpack_frames(frames)
msg = await from_frames(
frames,
deserialize=self.deserialize,
deserializers=deserializers,
allow_offload=self.allow_offload,
)
except EOFError:
# Frames possibly garbled or truncated by communication error
self.abort()
raise CommClosedError("aborted stream on truncated data")
return msg