def get_tool_panel_config_tool_path_install_dir(app, repository):
"""
Return shed-related tool panel config, the tool_path configured in it, and the relative path to
the directory where the repository is installed. This method assumes all repository tools are
defined in a single shed-related tool panel config.
"""
tool_shed = common_util.remove_port_from_tool_shed_url(
str(repository.tool_shed))
relative_install_dir = '%s/repos/%s/%s/%s' % (
tool_shed, str(repository.owner), str(
repository.name), str(repository.installed_changeset_revision))
# Get the relative tool installation paths from each of the shed tool configs.
shed_config_dict = None
if hasattr(repository, "get_shed_config_dict"):
shed_config_dict = repository.get_shed_config_dict(app)
if not shed_config_dict:
# Just pick a semi-random shed config.
for shed_config_dict in app.toolbox.dynamic_confs(
include_migrated_tool_conf=True):
if (repository.dist_to_shed and shed_config_dict['config_filename'] == app.config.migrated_tools_config) \
or (not repository.dist_to_shed and shed_config_dict['config_filename'] != app.config.migrated_tools_config):
break
shed_tool_conf = shed_config_dict['config_filename']
tool_path = shed_config_dict['tool_path']
return shed_tool_conf, tool_path, relative_install_dir
def get_tool_panel_config_tool_path_install_dir(app, repository):
"""
Return shed-related tool panel config, the tool_path configured in it, and the relative path to
the directory where the repository is installed. This method assumes all repository tools are
defined in a single shed-related tool panel config.
"""
tool_shed = common_util.remove_port_from_tool_shed_url(
str(repository.tool_shed))
relative_install_dir = '%s/repos/%s/%s/%s' % (
tool_shed, str(repository.owner), str(
repository.name), str(repository.installed_changeset_revision))
# Get the relative tool installation paths from each of the shed tool configs.
shed_config_dict = repository.get_shed_config_dict(app)
shed_tool_conf = shed_config_dict['config_filename']
tool_path = shed_config_dict['tool_path']
return shed_tool_conf, tool_path, relative_install_dir
def get_tool_panel_config_tool_path_install_dir(app, repository):
"""
Return shed-related tool panel config, the tool_path configured in it, and the relative path to
the directory where the repository is installed. This method assumes all repository tools are
defined in a single shed-related tool panel config.
"""
tool_shed = common_util.remove_port_from_tool_shed_url(str(repository.tool_shed))
relative_install_dir = '%s/repos/%s/%s/%s' % (tool_shed,
str(repository.owner),
str(repository.name),
str(repository.installed_changeset_revision))
# Get the relative tool installation paths from each of the shed tool configs.
shed_config_dict = repository.get_shed_config_dict(app)
if not shed_config_dict:
# Just pick a semi-random shed config.
for shed_config_dict in app.toolbox.dynamic_confs(include_migrated_tool_conf=True):
if (repository.dist_to_shed and shed_config_dict['config_filename'] == app.config.migrated_tools_config) \
or (not repository.dist_to_shed and shed_config_dict['config_filename'] != app.config.migrated_tools_config):
break
shed_tool_conf = shed_config_dict['config_filename']
tool_path = shed_config_dict['tool_path']
return shed_tool_conf, tool_path, relative_install_dir