def _or_tuning_curve_window(self):
"""
Open a Tuning Curve plot for the unit currently
identified by a right click.
"""
if 'plot' in self._right_click_info:
plot = self._right_click_info['plot']
sheet = topo.sim[plot.plot_src_name]
center_x,center_y=self._right_click_info['coords'][1]
r,c = self._right_click_info['coords'][0]
try:
from topo.command.pylabplot import cyclic_tuning_curve
cyclic_tuning_curve(x_axis="orientation",coords=[(center_x,center_y)],sheet=sheet)
except AttributeError:
topo.sim.warning("No orientation tuning curve measurements are available yet for sheet %s; run the Orientation Tuning (Fullfield) command and try again."%sheet.name)
def _or_tuning_curve_window(self):
"""
Open a Tuning Curve plot for the unit currently
identified by a right click.
"""
if 'plot' in self._right_click_info:
plot = self._right_click_info['plot']
sheet = topo.sim[plot.plot_src_name]
center_x,center_y=self._right_click_info['coords'][1]
r,c = self._right_click_info['coords'][0]
try:
from topo.command.pylabplot import cyclic_tuning_curve
cyclic_tuning_curve(x_axis="orientation",coords=[(center_x,center_y)],sheet=sheet)
except AttributeError:
topo.sim.warning("No orientation tuning curve measurements are available yet for sheet %s; run the Orientation Tuning (Fullfield) command and try again."%sheet.name)
def rf_analysis():
import topo
import pylab
import topo.analysis.vision
import contrib.jacommands
from topo.command.analysis import save_plotgroup
from topo.base.projection import ProjectionSheet
from topo.sheet import GeneratorSheet
from topo.command.analysis import measure_or_tuning_fullfield, measure_or_pref
from topo.command.pylabplot import cyclic_tuning_curve
from param import normalize_path
if(float(topo.sim.time()) <=20010):
save_plotgroup("Orientation Preference")
save_plotgroup("Activity")
# Plot all projections for all measured_sheets
measured_sheets = [s for s in topo.sim.objects(ProjectionSheet).values()
if hasattr(s,'measure_maps') and s.measure_maps]
for s in measured_sheets:
for p in s.projections().values():
save_plotgroup("Projection",projection=p)
prefix="WithGC"
measure_or_tuning_fullfield()
s=topo.sim["V1"]
cyclic_tuning_curve(filename_suffix=prefix,filename="OrientationTC:V1:[0,0]",sheet=s,coords=[(0,0)],x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,filename="OrientationTC:V1:[0.1,0.1]",sheet=s,coords=[(0.1,0.1)],x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,filename="OrientationTC:V1:[-0.1,-0.1]",sheet=s,coords=[(-0.1,-0.1)],x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,filename="OrientationTC:V1:[0.1,-0.1]",sheet=s,coords=[(0.1,-0.1)],x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,filename="OrientationTC:V1:[-0.1,0.1]",sheet=s,coords=[(-0.1,0.1)],x_axis="orientation")
else:
topo.command.activity_history = numpy.concatenate((contrib.jacommands.activity_history,topo.sim["V1"].activity.flatten()),axis=1)
if(float(topo.sim.time()) == 20000):
topo.sim["V1"].plastic=False
contrib.jacommands.homeostatic_analysis_function()
if(float(topo.sim.time()) == 20001):
pylab.figure()
def rf_analysis():
import topo
import pylab
import topo.analysis.vision
import contrib.jacommands
from topo.command.analysis import save_plotgroup
from topo.base.projection import ProjectionSheet
from topo.sheet import GeneratorSheet
from topo.command.analysis import measure_or_tuning_fullfield, measure_or_pref
from topo.command.pylabplot import cyclic_tuning_curve
from param import normalize_path
if (float(topo.sim.time()) <= 20010):
save_plotgroup("Orientation Preference")
save_plotgroup("Activity")
# Plot all projections for all measured_sheets
measured_sheets = [
s for s in topo.sim.objects(ProjectionSheet).values()
if hasattr(s, 'measure_maps') and s.measure_maps
]
for s in measured_sheets:
for p in s.projections().values():
save_plotgroup("Projection", projection=p)
prefix = "WithGC"
measure_or_tuning_fullfield()
s = topo.sim["V1"]
cyclic_tuning_curve(filename_suffix=prefix,
filename="OrientationTC:V1:[0,0]",
sheet=s,
coords=[(0, 0)],
x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,
filename="OrientationTC:V1:[0.1,0.1]",
sheet=s,
coords=[(0.1, 0.1)],
x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,
filename="OrientationTC:V1:[-0.1,-0.1]",
sheet=s,
coords=[(-0.1, -0.1)],
x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,
filename="OrientationTC:V1:[0.1,-0.1]",
sheet=s,
coords=[(0.1, -0.1)],
x_axis="orientation")
cyclic_tuning_curve(filename_suffix=prefix,
filename="OrientationTC:V1:[-0.1,0.1]",
sheet=s,
coords=[(-0.1, 0.1)],
x_axis="orientation")
else:
topo.command.activity_history = numpy.concatenate(
(contrib.jacommands.activity_history,
topo.sim["V1"].activity.flatten()),
axis=1)
if (float(topo.sim.time()) == 20000):
topo.sim["V1"].plastic = False
contrib.jacommands.homeostatic_analysis_function()
if (float(topo.sim.time()) == 20001):
pylab.figure()