def default_analysis_function():
"""
Basic example of an analysis command for run_batch; users are
likely to need something similar but highly customized.
"""
# CEBALERT: why are these imports here rather than at the top?
import topo
from topo.plotting.plotgroup import save_plotgroup
# Save all plotgroups listed in default_analysis_plotgroups
for pg in default_analysis_plotgroups:
save_plotgroup(pg,use_cached_results=True)
# Plot projections from each measured map
measured_sheets = [s for s in topo.sim.objects(ProjectionSheet).values()
if hasattr(s,'measure_maps') and s.measure_maps]
for s in measured_sheets:
for p in s.in_connections:
save_plotgroup("Projection",projection=p)
# Test response to a standardized pattern
from imagen import Gaussian
from analysis import pattern_present
from math import pi
pattern_present(inputs=Gaussian(orientation=pi/4,aspect_ratio=4.7))
save_plotgroup("Activity",saver_params={"filename_suffix":"_45d"})
def default_analysis_function():
"""
Basic example of an analysis command for run_batch; users are
likely to need something similar but highly customized.
"""
# CEBALERT: why are these imports here rather than at the top?
import topo
from topo.plotting.plotgroup import save_plotgroup
# Save all plotgroups listed in default_analysis_plotgroups
for pg in default_analysis_plotgroups:
save_plotgroup(pg,use_cached_results=True)
# Plot projections from each measured map
measured_sheets = [s for s in topo.sim.objects(ProjectionSheet).values()
if hasattr(s,'measure_maps') and s.measure_maps]
for s in measured_sheets:
for p in s.in_connections:
save_plotgroup("Projection",projection=p)
# Test response to a standardized pattern
from topo.pattern import Gaussian
from analysis import pattern_present
from math import pi
pattern_present(inputs=Gaussian(orientation=pi/4,aspect_ratio=4.7))
save_plotgroup("Activity",saver_params={"filename_suffix":"_45d"})
def test_cfprojection_saving(self):
save_plotgroup('Projection',
projection=self.sim['B'].projections('Afferent'))
self.exists("testplotfilesaver_000000.00_B_Afferent.png")
def test_cf_saving(self):
save_plotgroup("Connection Fields",sheet=self.sim['B'])
self.exists("testplotfilesaver_000000.00_Afferent.png")
def test_orientation_preference_saving(self):
save_plotgroup('Orientation Preference')
self.exists("testplotfilesaver_000000.00_B_Orientation_Preference.png")
self.exists("testplotfilesaver_000000.00_B_Orientation_PreferenceAndSelectivity.png")
self.exists("testplotfilesaver_000000.00_B_Orientation_Selectivity.png")
self.exists("testplotfilesaver_000000.00__Color_Key.png")
def test_activity_saving(self):
save_plotgroup('Activity')
self.exists("testplotfilesaver_000000.00_A_Activity.png")
self.exists("testplotfilesaver_000000.00_B_Activity.png")