def __init__(self, n_feats, device='cpu'):
super(Net, self).__init__()
self.atom_embedding = nn.Linear(n_feats, n_feats)
self.conv1 = GCNConv(n_feats, n_feats)
self.pool1 = EdgePooling(n_feats)
self.conv2 = GCNConv(n_feats, n_feats)
self.pool2 = EdgePooling(n_feats)
self.linear = torch.nn.Linear(2 * n_feats, 1)
self.device = device
def __init__(self, dataset, num_layers, hidden, ratio):
super(EdgePool, self).__init__()
self.conv1 = GNN_Block(dataset.num_features, hidden)
self.pool1 = EdgePooling(hidden)
self.convs = torch.nn.ModuleList()
self.pools = torch.nn.ModuleList()
self.convs.extend(
[GNN_Block(hidden, hidden) for i in range(num_layers - 1)])
self.pools.extend(
[EdgePooling(hidden) for i in range((num_layers) - 1)])
self.embed_final = GNN_Block(hidden, hidden)
self.jump = JumpingKnowledge(mode='cat')
self.lin1 = Linear((num_layers + 1) * hidden, hidden)
self.lin2 = Linear(hidden, dataset.num_classes)
def __init__(self,
in_channels,
out_channels,
beta = 0.3):
super().__init__()
self.in_channels = in_channels
self.out_channels = out_channels
self.beta = beta
text_feature_size = 220
self.conv1_img = GATConv(train_dataset.num_features, 512, heads= 3, dropout=0.2)
self.conv1_text = GATConv(text_feature_size, text_feature_size // 2 , heads= 3, dropout=0.2)
self.conv2_img = GATConv(512 * 3, 512, heads= 1, dropout=0.2)
self.conv2_text = GATConv(text_feature_size // 2 * 3, text_feature_size // 2, heads= 1, dropout=0.2)
self.conv3_img = GATConv(512, 20, heads = 1, dropout = 0.2)
self.conv3_text = GATConv(text_feature_size // 2, 20, heads = 1, dropout= 0.2)
self.conv4 = GATConv(40, 20, heads= 2, dropout=0.2)
self.pool1= EdgePooling(40)
#global_mean_pool
self.lin1 = Lin(40, 20)
self.lin2 = Lin(20, 2)
def test_compute_edge_score_sigmoid():
edge_index = torch.tensor([[0, 0, 0, 1, 1, 1, 2, 2, 2, 3, 3, 3, 4, 5],
[1, 2, 3, 0, 2, 3, 0, 1, 3, 0, 1, 2, 5, 4]])
raw = torch.randn(edge_index.size(1))
e = EdgePooling.compute_edge_score_sigmoid(raw, edge_index, 6)
assert torch.all(e >= 0) and torch.all(e <= 1)
assert torch.all(torch.argsort(raw) == torch.argsort(e))
def __init__(self, sample, multipliers=[4, 4, 4], channels=8, finalnodes=2):
super(GraphConvPoolNet, self).__init__()
self.channels = channels
self.input = GraphConv(sample.num_node_features, self.channels)
self.conv1 = GraphConv(self.channels, multipliers[0] * self.channels)
self.pool1 = EdgePooling(multipliers[0] * self.channels, dropout=0.2)
self.conv2 = GraphConv(multipliers[0] * self.channels, (multipliers[1] + multipliers[0]) * self.channels)
self.pool2 = EdgePooling((multipliers[1] + multipliers[0]) * self.channels, dropout=0.2)
self.conv3 = GraphConv((multipliers[1] + multipliers[0]) * self.channels,
(multipliers[2] + multipliers[1] + multipliers[0]) * self.channels)
self.looppool = EdgePooling((multipliers[2] + multipliers[1] + multipliers[0]) * self.channels, dropout=0.2)
self.loopconv = GraphConv((multipliers[2] + multipliers[1] + multipliers[0]) * self.channels,
(multipliers[2] + multipliers[1] + multipliers[0]) * self.channels)
# Readout layer
self.readout = max_pool_x
self.finalnodes = finalnodes
self.output = nn.Linear(self.finalnodes * (multipliers[2] + multipliers[1] + multipliers[0]) * self.channels, 1)
def test_compute_edge_score_softmax():
edge_index = torch.tensor([[0, 0, 0, 1, 1, 1, 2, 2, 2, 3, 3, 3, 4, 5],
[1, 2, 3, 0, 2, 3, 0, 1, 3, 0, 1, 2, 5, 4]])
raw = torch.randn(edge_index.size(1))
e = EdgePooling.compute_edge_score_softmax(raw, edge_index, 6)
assert torch.all(e >= 0) and torch.all(e <= 1)
# Test whether all incoming edge scores sum up to one.
assert torch.allclose(scatter_add(e, edge_index[1]),
torch.Tensor([1, 1, 1, 1, 1, 1]))
def poollayer(self, pooltype):
self.pooltype = pooltype
if self.pooltype == 'TopKPool':
self.pool1 = TopKPooling(1024)
self.pool2 = TopKPooling(1024)
elif self.pooltype == 'EdgePool':
self.pool1 = EdgePooling(1024)
self.pool2 = EdgePooling(1024)
elif self.pooltype == 'ASAPool':
self.pool1 = ASAPooling(1024)
self.pool2 = ASAPooling(1024)
elif self.pooltype == 'SAGPool':
self.pool1 = SAGPooling(1024)
self.pool2 = SAGPooling(1024)
else:
print('Such graph pool method is not implemented!!')
return self.pool1, self.pool2
def __init__(self, k=2, w1=128, w2=128, w3=128):
super(Net, self).__init__()
self.conv = CustomGCN(2, 1, cached=False)
self.conv.weight.requires_grad = False
self.topk = TopKPooling(1, min_score=0.1)
self.topk.weight.requires_grad = False
self.conv1 = ChebConv(2, w1, k)
self.bn1 = BatchNorm1d(w1)
self.pool1 = EdgePooling(w1)
self.conv2 = ChebConv(w1, w2, k)
self.bn2 = BatchNorm1d(w2)
self.pool2 = EdgePooling(w2)
self.conv3 = ChebConv(w2, w3, k)
self.bn3 = BatchNorm1d(w3)
self.linear = Linear(w3, 3)
def test_edge_pooling():
x = torch.Tensor([[0], [1], [2], [3], [4], [5], [-1]])
edge_index = torch.tensor([[0, 0, 0, 1, 1, 1, 2, 2, 2, 3, 3, 3, 4, 5, 6],
[1, 2, 3, 0, 2, 3, 0, 1, 3, 0, 1, 2, 5, 4, 0]])
batch = torch.tensor([0, 0, 0, 0, 1, 1, 0])
op = EdgePooling(in_channels=1)
assert op.__repr__() == 'EdgePooling(1)'
# Setting parameters fixed so we can test the expected outcome.
op.lin.weight[0, 0] = 1
op.lin.weight[0, 1] = 1
op.lin.bias[0] = 0
# Test pooling.
new_x, new_edge_index, new_batch, unpool_info = op(x, edge_index, batch)
assert new_x.size(0) == new_batch.size(0) == 4
assert new_batch.tolist() == [1, 0, 0, 0]
assert torch.all(new_batch == torch.tensor([1, 0, 0, 0]))
assert new_edge_index.tolist() == [[0, 1, 1, 2, 2, 3], [0, 1, 2, 1, 2, 2]]
# Test unpooling.
unpooled_x, unpooled_edge_index, unpooled_batch = op.unpool(
new_x, unpool_info)
assert unpooled_edge_index.tolist() == edge_index.tolist()
assert unpooled_batch.tolist() == batch.tolist()
assert x.size() == unpooled_x.size()
assert unpooled_x.tolist() == [[1], [1], [5], [5], [9], [9], [-1]]
# Test edge cases.
x = torch.Tensor([[0], [1], [2], [3], [4], [5]])
edge_index = torch.tensor([[0, 0, 0, 1, 1, 1, 2, 2, 2, 3, 3, 3, 4, 5],
[1, 2, 3, 0, 2, 3, 0, 1, 3, 0, 1, 2, 5, 4]])
batch = torch.tensor([0, 0, 0, 0, 1, 1])
new_x, new_edge_index, new_batch, _ = op(x, edge_index, batch)
assert new_x.size(0) == new_batch.size(0) == 3
assert new_batch.tolist() == [1, 0, 0]
assert new_edge_index.tolist() == [[0, 1, 1, 2, 2], [0, 1, 2, 1, 2]]
def __init__(self, dataset, num_layers, hidden):
super().__init__()
self.conv1 = GraphConv(dataset.num_features, hidden, aggr='mean')
self.convs = torch.nn.ModuleList()
self.pools = torch.nn.ModuleList()
self.convs.extend([
GraphConv(hidden, hidden, aggr='mean')
for i in range(num_layers - 1)
])
self.pools.extend(
[EdgePooling(hidden) for i in range((num_layers) // 2)])
self.jump = JumpingKnowledge(mode='cat')
self.lin1 = Linear(num_layers * hidden, hidden)
self.lin2 = Linear(hidden, dataset.num_classes)
def message(self, x_i, x_j, edge_index: Adj, edge_attr: OptTensor,
size) -> Tensor:
if self.debug:
print('a x_j:', x_j.shape, 'x_i:', x_i.shape, 'edge_attr:',
edge_attr.shape)
if self.step == 0:
x_i = F.leaky_relu(self.atom_fc(x_i)) # code 3
# neighbor_feature => neighbor_fc
x_j = torch.cat([x_j, edge_attr], dim=-1) # code 8
if self.debug:
print('b neighbor_feature i = 0', x_j.shape)
x_j = F.leaky_relu(self.neighbor_fc(x_j)) # code 9
if self.debug:
print('c neighbor_feature i = 0', x_j.shape)
# align score
evu = F.leaky_relu(self.align(torch.cat([x_i, x_j],
dim=-1))) # code 10
if self.debug:
print('d align_score:', evu.shape)
avu = EdgePooling.compute_edge_score_softmax(evu, edge_index,
edge_index.max().item() +
1) # code 11
if self.debug:
print('e attention_weight:', avu.shape)
# to do downscaling 200 fp => 32
c_i = F.elu(torch.mul(avu, self.attend(self.dropout(x_i)))) # code 12
# to do upscaling 32 => 200 fp
if self.debug:
print('f context', c_i.shape)
x_i = self.rnn(c_i, x_i)
if self.debug:
print('g gru', c_i.shape)
return x_i