def _extract_biblio(self, redirect_page, id=None):
redirect_dict_of_keylists = {'url': ['url']}
redirect_dict = provider._extract_from_xml(redirect_page,
redirect_dict_of_keylists)
logger.info(u"%20s WARNING, url= %s" %
(self.provider_name, redirect_dict["url"]))
# try to get a response from the data provider
response = self.http_get(redirect_dict["url"])
if response.status_code != 200:
logger.warning(u"%20s WARNING, status_code=%i getting %s" %
(self.provider_name, response.status_code, url))
self._get_error(response.status_code, response)
return {}
dict_of_keylists = {
'title': ['dataset', 'title'],
'published_date': ['dataset', 'pubDate']
}
biblio_dict = provider._extract_from_xml(response.text,
dict_of_keylists)
return biblio_dict
def _extract_biblio(self, redirect_page, id=None):
redirect_dict_of_keylists = {
'url' : ['url']
}
redirect_dict = provider._extract_from_xml(redirect_page, redirect_dict_of_keylists)
logger.info("%20s WARNING, url= %s"
% (self.provider_name, redirect_dict["url"]))
# try to get a response from the data provider
response = self.http_get(redirect_dict["url"])
if response.status_code != 200:
logger.warning("%20s WARNING, status_code=%i getting %s"
% (self.provider_name, response.status_code, url))
self._get_error(response.status_code, response)
return {}
dict_of_keylists = {
'title' : ['dataset', 'title'],
'published_date' : ['dataset', 'pubDate']
}
biblio_dict = provider._extract_from_xml(response.text, dict_of_keylists)
return biblio_dict
def _extract_biblio(self, page, id=None):
dict_of_keylists = {"year": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Year"],
"month": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Month"],
"day": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Day"],
"title": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleTitle"],
"journal": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "Title"],
}
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
dom_authors = provider._find_all_in_xml(page, "LastName")
try:
biblio_dict["authors"] = ", ".join([author.firstChild.data for author in dom_authors])
except (AttributeError, TypeError):
pass
try:
datetime_published = datetime.datetime(year=biblio_dict["year"],
month=biblio_dict["month"],
day=biblio_dict["day"])
biblio_dict["date"] = datetime_published.isoformat()
del biblio_dict["month"]
del biblio_dict["day"]
except (AttributeError, TypeError, KeyError):
logger.debug("%20s don't have full date information %s" % (self.provider_name, id))
pass
return biblio_dict
def _extract_biblio(self, page, id=None):
dict_of_keylists = {
'title': ['entry', 'title'],
'date': ['entry', 'published'],
}
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
dom_authors = provider._find_all_in_xml(page, "name")
try:
authors = [author.firstChild.data for author in dom_authors]
biblio_dict["authors"] = ", ".join(
[author.split(" ")[-1] for author in authors])
except (AttributeError, TypeError):
pass
try:
biblio_dict["year"] = biblio_dict["date"][0:4]
except KeyError:
pass
biblio_dict["repository"] = "arXiv"
biblio_dict["free_fulltext_url"] = self._get_templated_url(
self.aliases_url_template, id, "aliases")
return biblio_dict
def test_extract_xml(self):
page = self.TEST_XML
dict_of_keylists = {
'count' : ['total_count']}
response = provider._extract_from_xml(page, dict_of_keylists)
assert_equals(response, {'count': 17})
def _extract_biblio_efetch(self, page, id=None):
if "ArticleDate" in page:
dict_of_keylists = {"year": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Year"],
"month": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Month"],
"day": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleDate", "Day"],
"title": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleTitle"],
"abstract": ["PubmedArticleSet", "MedlineCitation", "Article", "Abstract", "AbstractText"],
"issn": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "ISSN"],
"journal": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "Title"],
}
else:
dict_of_keylists = {"year": ["PubmedArticleSet", "MedlineCitation", "Article", "PubDate", "Year"],
"month": ["PubmedArticleSet", "MedlineCitation", "Article", "PubDate", "Month"],
"day": ["PubmedArticleSet", "MedlineCitation", "Article", "PubDate", "Day"],
"title": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleTitle"],
"abstract": ["PubmedArticleSet", "MedlineCitation", "Article", "Abstract", "AbstractText"],
"issn": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "ISSN"],
"journal": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "Title"],
}
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
dom_authors = provider._find_all_in_xml(page, "LastName")
try:
biblio_dict["authors"] = ", ".join([author.firstChild.data for author in dom_authors])
except (AttributeError, TypeError):
pass
mesh_list = provider._find_all_in_xml(page, "DescriptorName")
try:
if mesh_list:
biblio_dict["keywords"] = "; ".join([mesh_term.firstChild.data for mesh_term in mesh_list])
except (AttributeError, TypeError):
pass
try:
biblio_dict["issn"] = biblio_dict["issn"].replace("-", "")
except (AttributeError, KeyError):
pass
try:
datetime_published = datetime.datetime(year=biblio_dict["year"],
month=biblio_dict["month"],
day=biblio_dict["day"])
biblio_dict["date"] = datetime_published.isoformat()
biblio_dict["year"] = re.sub("\D", "", str(biblio_dict["year"]))
del biblio_dict["month"]
del biblio_dict["day"]
except (AttributeError, TypeError, KeyError):
logger.debug(u"%20s don't have full date information %s" % (self.provider_name, id))
pass
try:
biblio_dict["year"] = str(biblio_dict["year"])
except (KeyError):
pass
return biblio_dict
def _extract_aliases_from_doi(self, page, doi):
dict_of_keylists = {"pmid": ["eSearchResult", "IdList", "Id"],
"QueryTranslation": ["eSearchResult", "QueryTranslation"]}
aliases_dict = provider._extract_from_xml(page, dict_of_keylists)
aliases_list = []
if aliases_dict:
if aliases_dict["QueryTranslation"] == (doi + "[All Fields]"):
aliases_list = [("pmid", str(aliases_dict["pmid"]))]
return aliases_list
def _extract_biblio(self, page, id=None):
dict_of_keylists = {
'title' : ['Slideshow', 'Title'],
'username' : ['Slideshow', 'Username'],
'created' : ['Slideshow', 'Created'],
}
self._sanity_check_page(page)
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
biblio_dict["repository"] = "Slideshare"
return biblio_dict
def _extract_aliases(self, page, id=None):
dict_of_keylists = {'title': ['Slideshow', 'Title']}
self._sanity_check_page(page)
aliases_dict = provider._extract_from_xml(page, dict_of_keylists)
if aliases_dict:
aliases_list = [(namespace, nid)
for (namespace, nid) in aliases_dict.iteritems()]
else:
aliases_list = []
return aliases_list
def _extract_biblio(self, page, id=None):
dict_of_keylists = {
'title': ['Slideshow', 'Title'],
'username': ['Slideshow', 'Username'],
'created': ['Slideshow', 'Created'],
}
self._sanity_check_page(page)
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
biblio_dict["repository"] = "Slideshare"
return biblio_dict
def _extract_aliases(self, page, id=None):
dict_of_keylists = {
'title' : ['Slideshow', 'Title']
}
self._sanity_check_page(page)
aliases_dict = provider._extract_from_xml(page, dict_of_keylists)
if aliases_dict:
aliases_list = [(namespace, nid) for (namespace, nid) in aliases_dict.iteritems()]
else:
aliases_list = []
return aliases_list
def _extract_biblio(self, page, id=None):
dict_of_keylists = {"year": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "PubDate", "Year"],
"title": ["PubmedArticleSet", "MedlineCitation", "Article", "ArticleTitle"],
"journal": ["PubmedArticleSet", "MedlineCitation", "Article", "Journal", "Title"],
}
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
dom_authors = provider._find_all_in_xml(page, "LastName")
try:
biblio_dict["authors"] = ", ".join([author.firstChild.data for author in dom_authors])
except (AttributeError, TypeError):
pass
return biblio_dict
def _extract_aliases(self, page, id=None):
dict_of_keylists = {'url': ['url']}
aliases_dict = provider._extract_from_xml(page, dict_of_keylists)
try:
doi = provider.doi_from_url_string(aliases_dict["url"])
if doi:
aliases_dict["doi"] = doi
except KeyError:
pass
if aliases_dict:
aliases_list = [(namespace, nid)
for (namespace, nid) in aliases_dict.iteritems()]
else:
aliases_list = []
return aliases_list
def _extract_metrics(self, page, status_code=200, id=None):
if status_code != 200:
if status_code == 404:
return {}
else:
raise(self._get_error(status_code))
self._sanity_check_page(page)
dict_of_keylists = {
'slideshare:downloads' : ['Slideshow', 'NumDownloads'],
'slideshare:views' : ['Slideshow', 'NumViews'],
'slideshare:comments' : ['Slideshow', 'NumComments'],
'slideshare:favorites' : ['Slideshow', 'NumFavorites'],
}
metrics_dict = provider._extract_from_xml(page, dict_of_keylists)
for mykey in metrics_dict:
metrics_dict[mykey] = int( metrics_dict[mykey])
return metrics_dict
def _extract_metrics(self, page, status_code=200, id=None):
if status_code != 200:
if status_code == 404:
return {}
else:
raise (self._get_error(status_code))
self._sanity_check_page(page)
dict_of_keylists = {
'slideshare:downloads': ['Slideshow', 'NumDownloads'],
'slideshare:views': ['Slideshow', 'NumViews'],
'slideshare:comments': ['Slideshow', 'NumComments'],
'slideshare:favorites': ['Slideshow', 'NumFavorites'],
}
metrics_dict = provider._extract_from_xml(page, dict_of_keylists)
for mykey in metrics_dict:
metrics_dict[mykey] = int(metrics_dict[mykey])
return metrics_dict
def _extract_aliases(self, page, id=None):
dict_of_keylists = {
'url' : ['url']
}
aliases_dict = provider._extract_from_xml(page, dict_of_keylists)
try:
doi = provider.doi_from_url_string(aliases_dict["url"])
if doi:
aliases_dict["doi"] = doi
except KeyError:
pass
if aliases_dict:
aliases_list = [(namespace, nid) for (namespace, nid) in aliases_dict.iteritems()]
else:
aliases_list = []
return aliases_list
def _extract_metrics(self, page, status_code=200, id=None):
if status_code != 200:
if status_code == 404:
return {}
else:
raise(self._get_error(status_code))
if not "links_getStats_response" in page:
raise ProviderContentMalformedError
dict_of_keylists = {
'facebook:likes' : ['share_count'],
'facebook:shares' : ['like_count'],
'facebook:comments' : ['comment_count'],
'facebook:clicks' : ['click_count']
}
metrics_dict = provider._extract_from_xml(page, dict_of_keylists)
return metrics_dict
def _extract_biblio(self, page, id=None):
dict_of_keylists = {
'title' : ['entry', 'title'],
'date' : ['entry', 'published'],
}
biblio_dict = provider._extract_from_xml(page, dict_of_keylists)
dom_authors = provider._find_all_in_xml(page, "name")
try:
authors = [author.firstChild.data for author in dom_authors]
biblio_dict["authors"] = ", ".join([author.split(" ")[-1] for author in authors])
except (AttributeError, TypeError):
pass
try:
biblio_dict["year"] = biblio_dict["date"][0:4]
except KeyError:
pass
biblio_dict["repository"] = "arXiv"
biblio_dict["free_fulltext_url"] = self._get_templated_url(self.aliases_url_template, id, "aliases")
return biblio_dict
def test_extract_xml(self):
page = self.TEST_XML
dict_of_keylists = {'count': ['total_count']}
response = provider._extract_from_xml(page, dict_of_keylists)
assert_equals(response, {'count': 17})