def dump_project_py():
"""Debug routine - dump project attributes to the log."""
# list all project.* attributes
for key in dir(project):
if not key.startswith('__'):
try:
log.info('project.%s=%s' % (key, eval('project.%s' % key)))
except AttributeError:
pass
def run_tsudat(json_data):
"""Run ANUGA on the Amazon EC2.
json_data the path to the JSON data file
Returns the boto instance object for the running image.
"""
# plug our exception handler into the python system
sys.excepthook = excepthook
# get JSON data and adorn project object with its data
adorn_project(json_data)
# default certain values if not supplied in JSON data
default_project_values()
# set logfile to be in run output folder
if project.debug:
log.log_logging_level = log.DEBUG
log.log_filename = os.path.join(project.output_folder, 'ui.log')
if project.debug:
dump_project_py()
# do all required data generation before EC2 run
log.info('#'*90)
log.info('# Launching simulation')
log.info('#'*90)
# copy all required python modules to scripts directory
ec2_name = os.path.join(ScriptsDir, Ec2RunTsuDATOnEC2)
log.debug("Copying EC2 run file '%s' to scripts directory '%s'."
% (Ec2RunTsuDAT, ec2_name))
shutil.copy(Ec2RunTsuDAT, ec2_name)
for extra in RequiredFiles:
log.info('Copying %s to S3 scripts directory' % extra)
shutil.copy(extra, ScriptsDir)
# dump the current 'projects' object back into JSON, put in 'scripts'
json_file = os.path.join(ScriptsDir, JsonDataFilename)
log.info('Dumping JSON to file %s' % json_file)
dump_json_to_file(project, json_file)
dump_project_py()
# bundle up the working directory, put it into S3
zipname = ('%s-%s-%s-%s.zip'
% (project.user, project.project,
project.scenario, project.setup))
zip_tmp_dir = tempfile.mkdtemp(prefix='tsudat2_zip_')
zippath = os.path.join(zip_tmp_dir, zipname)
log.info('Making zip %s from %s' % (zippath, project.working_directory))
make_dir_zip(project.working_directory, zippath)
os.system('ls -l %s' % zip_tmp_dir)
s3_name = os.path.join(project.InputS3DataDir, zipname)
try:
s3 = s3_connect()
bucket = s3.create_bucket(project.S3Bucket)
key = bucket.new_key(s3_name)
log.info('Creating S3 file: %s/%s' % (project.S3Bucket, s3_name))
key.set_contents_from_filename(zippath)
log.info('Done!')
key.set_acl('public-read')
except boto.exception.S3ResponseError, e:
log.critical('S3 error: %s' % str(e))
print('S3 error: %s' % str(e))
sys.exit(10)
'ScriptPath': ScriptsDir,
'getsww': getsww, #DELETE ME
'Debug': 'debug' if project.debug else 'production'}
user_data = json.dumps(user_data, ensure_ascii=True, separators=(',', ':'))
# save user data into <work_dir>/restart
restart_file = os.path.join(project.working_directory, '_restart_',
'%s_%s_%s_%s.restart'
% (project.user, project.project,
project.scenario, project.setup))
with open(restart_file, 'wb') as fp:
fp.write(user_data)
# actually start the instance
log.info('Starting AMI %s, user_data=%s' % (DefaultAmi, str(user_data)))
try:
instance = start_ami(DefaultAmi, user_data=user_data)
except boto.exception.EC2ResponseError, e:
log.critical('EC2 error: %s' % str(e))
print('EC2 error: %s' % str(e))
sys.exit(10)
print('*'*80)
print('* Started instance: %s' % instance.dns_name)
print('*'*80)
log.info('Started instance: %s' % instance.dns_name)
log.debug('instance: %s' % str(dir(instance)))
return instance
def bootstrap():
"""Bootstrap the TsuDAT run into existence.
The following globals are used (all are strings):
User user name
Project the TsuDAT project
Scenario the scenario
Setup the run setup ('trial', etc)
BaseDir base of the tsudat working directory
"""
log.info('bootstrap start, user_data globals:')
log.info(' User=%s' % User)
log.info(' UserDir=%s' % UserDir)
log.info(' Project=%s' % Project)
log.info(' Scenario=%s' % Scenario)
log.info(' Setup=%s' % Setup)
log.info(' BaseDir=%s' % BaseDir)
log.info(' Debug=%s' % Debug)
log.info(' Instance=%s' % Instance)
send_message(status=StatusStart)
# jigger the PYTHONPATH so we can import 'run_tsudat' from the common filesystem
new_pythonpath = os.path.join(UserDir, Project, Scenario, Setup,
ScriptsDirectory)
sys.path.append(new_pythonpath)
log.debug('Added additional import path=%s' % new_pythonpath)
# get the code for the rest of the simulation
import run_tsudat
# get path to the JSON file in scripts dir, pass to run_tsudat()
json_path = os.path.join(new_pythonpath, JSONFile)
log.info('Running run_tsudat.run_tsudat(%s)' % json_path)
gen_files = run_tsudat.run_tsudat(json_path)
# add local log files to the 'log' entry (*.log, *.out)
output_path = os.path.join(UserDir, Project, Scenario, Setup,
OutputsDirectory)
local_log_files = []
local_logs = glob.glob('*.log')
for l_l in local_logs:
dst = os.path.join(output_path, l_l)
shutil.copyfile(l_l, dst)
local_log_files.append(dst)
local_logs = glob.glob('*.out')
for l_l in local_logs:
dst = os.path.join(output_path, l_l)
shutil.copyfile(l_l, dst)
local_log_files.append(dst)
gen_files['log'] = local_log_files
# # before we possibly delete the gen_files['sww'], get output path
# save_zip_base = os.path.dirname(gen_files['sww'][0])[1:]
# log.debug('save_zip_base=%s' % save_zip_base)
# if user data shows 'getsww' as False, remove 'sww' key from dictionary
if not UserData.get('GETSWW', True):
msg = 'Userdata says not to save SWW files, deleting...'
log.info(msg)
del gen_files['sww']
# optionally dump returned file data
if Debug:
import pprint
pp = pprint.PrettyPrinter(indent=4)
gen_str = pprint.pformat(gen_files)
log.debug('Returned files:\n%s' % gen_str)
# convert gen_files to JSON and add to stopping message
send_message(status=StatusStop, payload=gen_files)
# stop this AMI
log.info('run_tsudat() finished, shutting down')
shutdown()
def bootstrap():
"""Bootstrap the TsuDAT run into existence.
The following globals are used (all are strings):
User user name
Project the TsuDAT project
Scenario the scenario
Setup the run setup ('trial', etc)
BaseDir base of the tsudat working directory
"""
log.info('bootstrap start, user_data globals:')
log.info(' User=%s' % User)
log.info(' Project=%s' % Project)
log.info(' Scenario=%s' % Scenario)
log.info(' Setup=%s' % Setup)
log.info(' BaseDir=%s' % BaseDir)
log.info(' Debug=%s' % Debug)
log.info(' Instance=%s' % Instance)
send_sqs_message(status=StatusStart)
# get name of ZIP working file
zip_name = DataFileFormat % (User, Project, Scenario, Setup)
# get an S3 connection
s3 = s3_connect()
# load the input data files from S3
key_str = ('%s/%s' % (InputS3DataDir, zip_name))
log.info('Loading %s from S3 ...' % key_str)
bucket = s3.get_bucket(S3Bucket)
if bucket is None:
abort("Can't find bucket '%s'" % S3Bucket)
try:
key = bucket.get_key(key_str)
except S3ResponseError:
abort("Can't find key '%s' in bucket '%s'" % (key_str, S3Bucket))
if key is None:
abort("Can't find key '%s' in bucket '%s'" % (key_str, S3Bucket))
key.get_contents_to_filename(InputZipFile)
log.info('Done')
# unzip the input data ZIP file into the local directory
log.debug('Unzipping %s ...' % InputZipFile)
z = zipfile.ZipFile(InputZipFile)
z.extractall(path='/')
if not Debug:
os.remove(InputZipFile)
log.debug('Done')
# now load any generated data from a previous run
key_str = ('%s/%s' % (OutputS3DataDir, zip_name))
log.info('Trying to load %s from S3 ...' % key_str)
try:
bucket = s3.get_bucket(S3Bucket)
key = bucket.get_key(key_str)
if key:
key.get_contents_to_filename(OutputZipFile)
log.info('Done')
# unpack generated data into working directory
log.debug('Unzipping %s ...' % OutputZipFile)
z = zipfile.ZipFile(OutputZipFile)
z.extractall(path='/')
if not Debug:
os.remove(OutputZipFile)
log.debug('Done')
else:
log.info('Previously generated data not found')
except S3ResponseError:
log.info('Previously generated data not found')
# jigger the PYTHONPATH so we can import 'run_tsudat' from the S3 data
new_pythonpath = os.path.join(BaseDir, User, Project, Scenario, Setup,
ScriptsDirectory)
sys.path.append(new_pythonpath)
log.debug('Added additional import path=%s' % new_pythonpath)
# get the code for the rest of the simulation
import run_tsudat
# get path to the JSON file in scripts dir, pass to run_tsudat()
json_path = os.path.join(new_pythonpath, JSONFile)
log.info('Running run_tsudat.run_tsudat()')
gen_files = run_tsudat.run_tsudat(json_path, logger=run_tsudat_log)
# add local log files to the 'log' entry
gen_files['log'] = glob.glob('*.log')
# before we possibly delete the gen_files['sww'], get output path
save_zip_base = os.path.dirname(gen_files['sww'][0])[1:]
log.debug('save_zip_base=%s' % save_zip_base)
# if user data shows 'getsww' as False, remove 'sww' key from dictionary
if not UserData.get('GETSWW', True):
msg = 'Userdata says not to save SWW files, deleting...'
log.info(msg)
send_sqs_message(status=StatusLog, msg=msg)
del gen_files['sww']
# optionally dump returned file data
if Debug:
import pprint
pp = pprint.PrettyPrinter(indent=4)
gen_str = pprint.pformat(gen_files)
log.debug('Returned files:\n%s' % gen_str)
# save generated data to a staging directory
# want same pathname for each file as in input ZIP archive
shutil.rmtree(save_zip_base, ignore_errors=True) # just in case
os.makedirs(save_zip_base)
for key in gen_files:
for f in gen_files[key]:
log.debug('Copying %s -> %s' % (f, save_zip_base))
shutil.copy2(f, save_zip_base)
# ZIP the generated directory
log.debug('zipping dir: %s' % save_zip_base)
make_dir_zip(save_zip_base, OutputZipFile)
# save generated directory back to S3
s3_name = '%s/%s' % (OutputS3DataDir, zip_name)
zip_size = os.path.getsize(OutputZipFile)
zip_size_mb = float(zip_size) / (1024*1024)
log.info('Saving %s (%.2fMB) to S3.' % (s3_name, zip_size_mb))
try:
bucket = s3.create_bucket(S3Bucket)
key = bucket.new_key(s3_name)
log.debug('Creating S3 file: %s/%s' % (S3Bucket, s3_name))
key.set_contents_from_filename(OutputZipFile)
log.debug('Done!')
key.set_acl('public-read')
except boto.exception.S3ResponseError, e:
log.critical('S3 error: %s' % str(e))
sys.exit(10)
key = bucket.new_key(s3_name)
log.debug('Creating S3 file: %s/%s' % (S3Bucket, s3_name))
key.set_contents_from_filename(OutputZipFile)
log.debug('Done!')
key.set_acl('public-read')
except boto.exception.S3ResponseError, e:
log.critical('S3 error: %s' % str(e))
sys.exit(10)
# convert gen_files to JSON and add to stopping message
gen_files_json = json.dumps(gen_files)
send_sqs_message(status=StatusStop, generated_datafile=s3_name,
payload=gen_files_json)
# stop this AMI
log.info('run_tsudat() finished, shutting down')
shutdown()
if __name__ == '__main__':
import re
global UserData, User, Project, Scenario, Setup, BaseDir, Debug, Instance
global S3Bucket
def excepthook(type, value, tb):
"""Exception hook routine."""
msg = '\n' + '='*80 + '\n'
msg += 'Uncaught exception:\n'
msg += ''.join(traceback.format_exception(type, value, tb))