def initialize(introspected_modules, load_xml_events=True):
"""
Initialize when Application is starting.
Check for new algorithms or new DataTypes.
"""
SettingsService().check_db_url(TvbProfile.current.db.DB_URL)
## Initialize DB
is_db_empty = initialize_startup()
## Create Projects storage root in case it does not exist.
initialize_storage()
## Populate DB algorithms, by introspection
event_folders = []
start_introspection_time = datetime.datetime.now()
for module in introspected_modules:
introspector = Introspector(module)
# Introspection is always done, even if DB was not empty.
introspector.introspect(True)
event_path = introspector.get_events_path()
if event_path:
event_folders.append(event_path)
# Now remove or mark as removed any unverified Algo-Group, Algo-Category or Portlet
to_invalidate, to_remove = dao.get_non_validated_entities(
start_introspection_time)
for entity in to_invalidate:
entity.removed = True
dao.store_entities(to_invalidate)
for entity in to_remove:
dao.remove_entity(entity.__class__, entity.id)
## Populate events
if load_xml_events:
read_events(event_folders)
if not TvbProfile.is_first_run():
## Create default users.
if is_db_empty:
dao.store_entity(
model.User(TvbProfile.current.web.admin.SYSTEM_USER_NAME, None,
None, True, None))
UserService().create_user(
username=TvbProfile.current.web.admin.ADMINISTRATOR_NAME,
password=TvbProfile.current.web.admin.ADMINISTRATOR_PASSWORD,
email=TvbProfile.current.web.admin.ADMINISTRATOR_EMAIL,
role=model.ROLE_ADMINISTRATOR)
## In case actions related to latest code-changes are needed, make sure they are executed.
CodeUpdateManager().run_all_updates()
## In case the H5 version changed, run updates on all DataTypes
if TvbProfile.current.version.DATA_CHECKED_TO_VERSION < TvbProfile.current.version.DATA_VERSION:
thread = threading.Thread(
target=FilesUpdateManager().run_all_updates)
thread.start()
## Clean tvb-first-time-run temporary folder, as we are no longer at the first run:
shutil.rmtree(TvbProfile.current.FIRST_RUN_STORAGE, True)
def setUp(self):
"""
Introspect supplementary folder:
"""
core_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
TvbProfile.current.web.CURRENT_DIR = os.path.dirname(core_path)
self.introspector = Introspector("tvb.tests.framework")
self.introspector.introspect(True)
def setUp(self):
"""
Introspect supplementary folder:
"""
core_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
TvbProfile.current.web.CURRENT_DIR = os.path.dirname(core_path)
adapters_init.__xml_folders__ = [os.path.join("core", "adapters")]
self.introspector = Introspector("tvb.tests.framework")
self.introspector.introspect(True)
def setUp(self):
"""
Reset the database before each test.
"""
self.reset_database()
#tvb_test path
core_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
self.old_path = cfg.CURRENT_DIR
cfg.CURRENT_DIR = os.path.dirname(core_path)
self.introspector = Introspector("tvb_test")
def setUp(self):
"""
This method sets up the necessary paths for testing.
"""
self.folder_path = os.path.dirname(__file__)
#tvb_test path
core_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
self.old_path = cfg.CURRENT_DIR
cfg.CURRENT_DIR = os.path.dirname(core_path)
adapters_init.__xml_folders__ = [os.path.join('core', 'adapters')]
self.introspector = Introspector("tvb_test")
self.introspector.introspect(True)
xml_group_path = os.path.join('core', 'adapters', "test_group.xml")
algo_group = dao.find_group('tvb_test.adapters.testgroupadapter', 'TestGroupAdapter', xml_group_path)
self.xml_group_adapter = ABCAdapter.build_adapter(algo_group)
self.xml_group_reader = self.xml_group_adapter.xml_reader
def initialize(introspected_modules, load_xml_events=True):
"""
Initialize when Application is starting.
Check for new algorithms or new DataTypes.
"""
SettingsService().check_db_url(cfg.DB_URL)
## Initialize DB
is_db_empty = initialize_startup()
## Create Projects storage root in case it does not exist.
initialize_storage()
## Populate DB algorithms, by introspection
event_folders = []
start_introspection_time = datetime.datetime.now()
for module in introspected_modules:
introspector = Introspector(module)
# Introspection is always done, even if DB was not empty.
introspector.introspect(True)
event_path = introspector.get_events_path()
if event_path:
event_folders.append(event_path)
# Now remove any unverified Algo-Groups, categories or Portlets
invalid_stored_entities = dao.get_non_validated_entities(
start_introspection_time)
for entity in invalid_stored_entities:
dao.remove_entity(entity.__class__, entity.id)
## Populate events
if load_xml_events:
eventhandler.read_events(event_folders)
## Make sure DB events are linked.
db_events.attach_db_events()
## Create default users.
if is_db_empty:
dao.store_entity(
model.User(cfg.SYSTEM_USER_NAME, None, None, True, None))
UserService().create_user(username=cfg.ADMINISTRATOR_NAME,
password=cfg.ADMINISTRATOR_PASSWORD,
email=cfg.ADMINISTRATOR_EMAIL,
role=ROLE_ADMINISTRATOR)
## In case actions related to latest code-changes are needed, make sure they are executed.
CodeUpdateManager().update_all()
def setUp(self):
"""
Set up any additionally needed parameters.
"""
super(GenshiTestGroup, self).setUp()
core_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
self.old_path = cfg.CURRENT_DIR
cfg.CURRENT_DIR = os.path.dirname(core_path)
adapters_init.__xml_folders__ = [os.path.join('interfaces', 'web')]
self.introspector = Introspector("tvb_test")
self.introspector.introspect(True)
xml_group_path = os.path.join('interfaces', 'web', "test_group.xml")
algo_group = dao.find_group('tvb_test.adapters.testgroupadapter',
'TestGroupAdapter', xml_group_path)
self.xml_group_adapter = ABCAdapter.build_adapter(algo_group)
input_tree = self.xml_group_adapter.get_input_tree()
input_tree = ABCAdapter.prepare_param_names(input_tree)
self.template_specification['inputList'] = input_tree
self.template_specification[base.KEY_PARAMETERS_CONFIG] = False
resulted_html = _template2string(self.template_specification)
self.soup = BeautifulSoup(resulted_html)
