def save( self, filename ): from ui.whiskerdata import save_trajectories save_trajectories( filename, self.compile() )
import traj
from ui.whiskerdata import save_trajectories
warnings.simplefilter("default",UserWarning)
if __name__ == '__main__':
parser = optparse.OptionParser( usage = "Usage: %prog source destination" )
options,args = parser.parse_args()
if len(args) != 2:
parser.error( "Expected source and destination file names but recieved %d arguments."%len(args) )
src, dst = args
if not os.path.exists(os.path.split(dst)[0]): # check path, do this before doing long calculation
raise IOError, "Could not find destination file %s"%dst
#
# Get data from source
#
ext = os.path.splitext(src)[1]
if ext == '.whiskers':
w = trace.Load_Whiskers(src)
data = array(list( summary.features(w) ))
elif ext == '.measurements':
data = traj.MeasurementsTable(src).asarray()
else:
raise IOError, "Source file extension not recognized. Got: %s"%ext
traj = summary._simpletraj(data)
save_trajectories(dst, traj)
def save(self, filename):
from ui.whiskerdata import save_trajectories
save_trajectories(filename, self.compile())
warnings.simplefilter("default", UserWarning)
if __name__ == '__main__':
parser = optparse.OptionParser(usage="Usage: %prog source destination")
options, args = parser.parse_args()
if len(args) != 2:
parser.error(
"Expected source and destination file names but recieved %d arguments."
% len(args))
src, dst = args
if not os.path.exists(os.path.split(
dst)[0]): # check path, do this before doing long calculation
raise IOError, "Could not find destination file %s" % dst
#
# Get data from source
#
ext = os.path.splitext(src)[1]
if ext == '.whiskers':
w = trace.Load_Whiskers(src)
data = array(list(summary.features(w)))
elif ext == '.measurements':
data = traj.MeasurementsTable(src).asarray()
else:
raise IOError, "Source file extension not recognized. Got: %s" % ext
traj = summary._simpletraj(data)
save_trajectories(dst, traj)