def test_rest(x, y,c=0,ratio='auto'):
c=c
if(c==0):
print('Random under-sampling')
US = UnderSampler(indices_support=indices_support, verbose=verbose,ratio=ratio)
x, y, idx_tmp = US.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
elif(c==1):
print('Tomek links')
TL = TomekLinks(verbose=verbose,ratio=ratio)
x, y = TL.fit_transform(x, y)
elif(c==2):
print('Clustering centroids')
CC = ClusterCentroids(verbose=verbose,ratio=ratio)
x, y = CC.fit_transform(x, y)
elif(c==3):
print('NearMiss-1')
NM1 = NearMiss(version=1, indices_support=indices_support, verbose=verbose,ratio=ratio)
x, y, idx_tmp = NM1.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
elif(c==4):
print('NearMiss-2')
NM2 = NearMiss(version=2, indices_support=indices_support, verbose=verbose,ratio=ratio)
x, y, idx_tmp = NM2.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
elif(c==5):
print('NearMiss-3')
NM3 = NearMiss(version=3, indices_support=indices_support, verbose=verbose,ratio=ratio)
x, y, idx_tmp = NM3.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
elif(c==6):
print('Neighboorhood Cleaning Rule')
NCR = NeighbourhoodCleaningRule(indices_support=indices_support, verbose=verbose,ratio=ratio)
x, y, idx_tmp = NCR.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
elif(c==7):
print('Random over-sampling')
OS = OverSampler(verbose=verbose,ratio=ratio)
x, y = OS.fit_transform(x, y)
elif(c==8):
print('SMOTE Tomek links')
STK = SMOTETomek(verbose=verbose,ratio=ratio)
x, y = STK.fit_transform(x, y)
elif(c==9):
print('SMOTE ENN')
SENN = SMOTEENN(verbose=verbose,ratio=ratio)
x, y = SENN.fit_transform(x, y)
else:
print('EasyEnsemble')
EE = EasyEnsemble(verbose=verbose,ratio=ratio)
x, y = EE.fit_transform(x, y)
return x, y
def test_rest(x, y):
print('Random under-sampling')
US = UnderSampler(indices_support=indices_support, verbose=verbose)
usx, usy, idx_tmp = US.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
print('Tomek links')
TL = TomekLinks(verbose=verbose)
tlx, tly = TL.fit_transform(x, y)
print('Clustering centroids')
CC = ClusterCentroids(verbose=verbose)
ccx, ccy = CC.fit_transform(x, y)
print('NearMiss-1')
NM1 = NearMiss(version=1, indices_support=indices_support, verbose=verbose)
nm1x, nm1y, idx_tmp = NM1.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
print('NearMiss-2')
NM2 = NearMiss(version=2, indices_support=indices_support, verbose=verbose)
nm2x, nm2y, idx_tmp = NM2.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
print('NearMiss-3')
NM3 = NearMiss(version=3, indices_support=indices_support, verbose=verbose)
nm3x, nm3y, idx_tmp = NM3.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
print('Neighboorhood Cleaning Rule')
NCR = NeighbourhoodCleaningRule(indices_support=indices_support, verbose=verbose)
ncrx, ncry, idx_tmp = NCR.fit_transform(x, y)
print ('Indices selected')
print(idx_tmp)
print('Random over-sampling')
OS = OverSampler(verbose=verbose)
ox, oy = OS.fit_transform(x, y)
print('SMOTE Tomek links')
STK = SMOTETomek(verbose=verbose)
stkx, stky = STK.fit_transform(x, y)
print('SMOTE ENN')
SENN = SMOTEENN(verbose=verbose)
sennx, senny = SENN.fit_transform(x, y)
print('EasyEnsemble')
EE = EasyEnsemble(verbose=verbose)
eex, eey = EE.fit_transform(x, y)
def test_tl_fit_transform():
"""Test the fit transform routine"""
# Resample the data
tl = TomekLinks(random_state=RND_SEED)
X_resampled, y_resampled = tl.fit_transform(X, Y)
currdir = os.path.dirname(os.path.abspath(__file__))
X_gt = np.load(os.path.join(currdir, 'data', 'tl_x.npy'))
y_gt = np.load(os.path.join(currdir, 'data', 'tl_y.npy'))
assert_array_equal(X_resampled, X_gt)
assert_array_equal(y_resampled, y_gt)
def test_tl_fit_transform():
"""Test the fit transform routine"""
# Resample the data
tl = TomekLinks(random_state=RND_SEED)
X_resampled, y_resampled = tl.fit_transform(X, Y)
currdir = os.path.dirname(os.path.abspath(__file__))
X_gt = np.load(os.path.join(currdir, 'data', 'tl_x.npy'))
y_gt = np.load(os.path.join(currdir, 'data', 'tl_y.npy'))
assert_array_equal(X_resampled, X_gt)
assert_array_equal(y_resampled, y_gt)
def test_tl_fit_transform_with_indices():
"""Test the fit transform routine with indices support"""
# Resample the data
tl = TomekLinks(return_indices=True, random_state=RND_SEED)
X_resampled, y_resampled, idx_under = tl.fit_transform(X, Y)
currdir = os.path.dirname(os.path.abspath(__file__))
X_gt = np.load(os.path.join(currdir, 'data', 'tl_x.npy'))
y_gt = np.load(os.path.join(currdir, 'data', 'tl_y.npy'))
idx_gt = np.load(os.path.join(currdir, 'data', 'tl_idx.npy'))
assert_array_equal(X_resampled, X_gt)
assert_array_equal(y_resampled, y_gt)
assert_array_equal(idx_under, idx_gt)
def test_tl_fit_transform_with_indices():
"""Test the fit transform routine with indices support"""
# Resample the data
tl = TomekLinks(return_indices=True, random_state=RND_SEED)
X_resampled, y_resampled, idx_under = tl.fit_transform(X, Y)
currdir = os.path.dirname(os.path.abspath(__file__))
X_gt = np.load(os.path.join(currdir, 'data', 'tl_x.npy'))
y_gt = np.load(os.path.join(currdir, 'data', 'tl_y.npy'))
idx_gt = np.load(os.path.join(currdir, 'data', 'tl_idx.npy'))
assert_array_equal(X_resampled, X_gt)
assert_array_equal(y_resampled, y_gt)
assert_array_equal(idx_under, idx_gt)
def balance_data_undersampling_tomek_links(self):
'''
Balance data clustering centroids.
'''
x = self.X
y = self.y
y.shape = (len(self.y))
verbose = True
TL = TomekLinks(verbose=verbose)
tlx, tly = TL.fit_transform(x, y)
self.X = tlx
self.y = tly
self.y.shape = (len(self.y), 1)
from unbalanced_dataset.under_sampling import TomekLinks
# Generate the dataset
X, y = make_classification(n_classes=2, class_sep=2, weights=[0.1, 0.9],
n_informative=3, n_redundant=1, flip_y=0,
n_features=20, n_clusters_per_class=1,
n_samples=5000, random_state=10)
# Instanciate a PCA object for the sake of easy visualisation
pca = PCA(n_components=2)
# Fit and transform x to visualise inside a 2D feature space
X_vis = pca.fit_transform(X)
# Apply the random under-sampling
tl = TomekLinks()
X_resampled, y_resampled = tl.fit_transform(X, y)
X_res_vis = pca.transform(X_resampled)
# Two subplots, unpack the axes array immediately
f, (ax1, ax2) = plt.subplots(1, 2)
ax1.scatter(X_vis[y == 0, 0], X_vis[y == 0, 1], label="Class #0", alpha=0.5,
edgecolor=almost_black, facecolor=palette[0], linewidth=0.15)
ax1.scatter(X_vis[y == 1, 0], X_vis[y == 1, 1], label="Class #1", alpha=0.5,
edgecolor=almost_black, facecolor=palette[2], linewidth=0.15)
ax1.set_title('Original set')
ax2.scatter(X_res_vis[y_resampled == 0, 0], X_res_vis[y_resampled == 0, 1],
label="Class #0", alpha=.5, edgecolor=almost_black,
facecolor=palette[0], linewidth=0.15)
ax2.scatter(X_res_vis[y_resampled == 1, 0], X_res_vis[y_resampled == 1, 1],
#undersample the scaled data
#US = UnderSampler(verbose=True)
US= TomekLinks(verbose=True)
#US = ClusterCentroids(verbose=True)
#US = NearMiss(version=1, verbose=verbose)
#US = OneSidedSelection(verbose=verbose)
#US = EasyEnsemble(verbose=verbose)
#US = NeighbourhoodCleaningRule(verbose=verbose)
#US = BalanceCascade(verbose=verbose)
#svm_args={'class_weight': 'auto'}
#US = SMOTE(kind='svm', verbose=verbose, **svm_args)
##US = SMOTE(kind='regular', verbose=verbose)
#US = SMOTETomek(verbose =verbose)
usx, usy = US.fit_transform((X_train), y_train)
#usx = X_train
#usy = y_train
X_train_new = usx
#X_test_new = out.transform(X_test)
X_test_new = (X_test)
#feature selection
#print str(doTreeFeatureSelection(SVC(), X_train, y_train).transform().shape)
#out = doRFEVC(SVC(kernel= 'linear'), X_train, y_train)
#out = doPCA(X_train)
#out = doVarianceThreshold(X_train, 1)
#doTreeFeatureSelection(SVC(), X_train_new, usy)
n_informative=3,
n_redundant=1,
flip_y=0,
n_features=20,
n_clusters_per_class=1,
n_samples=5000,
random_state=10)
# Instanciate a PCA object for the sake of easy visualisation
pca = PCA(n_components=2)
# Fit and transform x to visualise inside a 2D feature space
X_vis = pca.fit_transform(X)
# Apply the random under-sampling
tl = TomekLinks()
X_resampled, y_resampled = tl.fit_transform(X, y)
X_res_vis = pca.transform(X_resampled)
# Two subplots, unpack the axes array immediately
f, (ax1, ax2) = plt.subplots(1, 2)
ax1.scatter(X_vis[y == 0, 0],
X_vis[y == 0, 1],
label="Class #0",
alpha=0.5,
edgecolor=almost_black,
facecolor=palette[0],
linewidth=0.15)
ax1.scatter(X_vis[y == 1, 0],
X_vis[y == 1, 1],
label="Class #1",