def pretty_data(data, name='', title=''):
pretty = PrettyTable()
if title:
pretty.get_string(title=title)
if not name:
pretty.header = False
if isinstance(data, dict):
head = [name + '_k', name + '_v']
pretty.field_names = head
for k, v in data.items():
if isinstance(v, (str)):
v = pretty_data(json.loads(v)) if is_valid_json(v) else v
else:
v = pretty_data(v)
pretty.add_row([k, v])
elif isinstance(data, (set, list)):
pretty.field_names = [name + '_i', name + '_v']
for k, v in enumerate(data):
if isinstance(v, (str)):
v = pretty_data(json.loads(v)) if is_valid_json(v) else v
else:
v = pretty_data(v)
pretty.add_row([k, v])
else:
pretty = data
return pretty
def _pretty_data(self, data, name='※', se='_'):
pretty = PrettyTable()
if isinstance(data, dict):
head = [name + '_k', name + '_v']
pretty.field_names = head
for k, v in data.items():
if isinstance(v, dict):
v = self._pretty_data(v)
elif isinstance(v, (set, list)):
v = self._pretty_data(v)
elif isinstance(v, (unicode, str)):
v = self._pretty_data(
json.loads(v)) if is_valid_json(v) else v
pretty.add_row([k, v])
elif isinstance(data, (set, list, str)):
pretty.field_names = [name + '_i', name + '_v']
for k, v in enumerate(data):
if isinstance(v, dict):
v = self._pretty_data(v)
elif isinstance(v, (set, list, str)):
v = self._pretty_data(v)
elif isinstance(v, (unicode, str)):
v = self._pretty_data(
json.loads(v)) if is_valid_json(v) else v
pretty.add_row([k, v])
else:
pretty = data
return pretty
def call_163(self, ep, method='post', token='', params=None):
if method not in ('post', 'get'):
print('不受支持的http方法')
return
if isinstance(params, dict):
params = json.dumps(params)
data = {}
enc = {
'params': self.enc_params(params),
'encSecKey': self.get_enckey()
}
data.update(enc)
data = config.tet_data
token = token or self.token
print('data={}'.format(data))
ret = getattr(requests, method)('http://music.163.com/' + ep,
params={
'csrf_token': token
},
data=data)
print(ret)
if not is_valid_json(ret.text):
return ret.text
return ret.json()
def typeahead():
res_obj = []
try:
query_value = util.get_arg_value("query", request.method)
if query_value == "":
res_obj = {"error_list":[{"error_code": "missing-query-key-in-query-json"}]}
elif util.is_valid_json(query_value) == False:
res_obj = {"error_list":[{"error_code": "invalid-query-json"}]}
else:
query_obj = json.loads(query_value)
util.trim_object(query_obj)
field_list_one = ["glytoucan_ac", "motif_name", "enzyme_uniprot_canonical_ac",
"glycan_pmid", "enzyme"]
field_list_two = ["uniprot_canonical_ac", "uniprot_id", "refseq_ac",
"protein_name", "gene_name", "pathway_id", "pathway_name",
"disease_name","disease_id",
"go_id", "go_term", "protein_pmid"]
tmp_obj_one, tmp_obj_two = [], []
if query_obj["field"] in field_list_one:
tmp_obj_one = apilib.glycan_typeahead(query_obj, config_obj)
if query_obj["field"] in field_list_two:
tmp_obj_two = apilib.protein_typeahead(query_obj, config_obj)
if "error_list" in tmp_obj_one:
res_obj = tmp_obj_one
elif "error_list" in tmp_obj_two:
res_obj = tmp_obj_two
else:
res_obj = tmp_obj_one + tmp_obj_two
except Exception, e:
res_obj = errorlib.get_error_obj("typeahead", traceback.format_exc(), path_obj)
def idmapping_list():
res_obj = {}
try:
query_value = util.get_arg_value("query", request.method)
if query_value == "":
res_obj = {"error_list":[{"error_code": "missing-query-key-in-query-json"}]}
elif util.is_valid_json(query_value) == False:
res_obj = {"error_list":[{"error_code": "invalid-query-json"}]}
else:
query_obj = json.loads(query_value)
util.trim_object(query_obj)
res_obj = util.get_cached_records_direct(query_obj, config_obj)
except Exception, e:
res_obj = errorlib.get_error_obj("idmapping_list", traceback.format_exc(), path_obj)
def glycan_to_biosynthesis_enzymes():
res_obj = {}
try:
query_value = util.get_arg_value("query", request.method)
if query_value == "":
res_obj = {"error_list":[{"error_code": "missing-query-key-in-query-json"}]}
elif util.is_valid_json(query_value) == False:
res_obj = {"error_list":[{"error_code": "invalid-query-json"}]}
else:
query_obj = json.loads(query_value)
util.trim_object(query_obj)
res_obj = apilib.glycan_to_biosynthesis_enzymes(query_obj, config_obj)
except Exception, e:
res_obj = errorlib.get_error_obj("glycan_to_biosynthesis_enzymes_direct", traceback.format_exc(), path_obj)
def protein_search():
res_obj = {}
try:
query_value = util.get_arg_value("query", request.method)
if query_value == "":
res_obj = {"error_list":[{"error_code": "missing-query-key-in-query-json"}]}
elif util.is_valid_json(query_value) == False:
res_obj = {"error_list":[{"error_code": "invalid-query-json"}]}
else:
query_obj = json.loads(query_value)
util.trim_object(query_obj)
res_obj = apilib.protein_search(query_obj, config_obj)
except Exception, e:
res_obj = errorlib.get_error_obj("protein_search", traceback.format_exc(), path_obj)
def categorized_typeahead():
res_obj = []
try:
query_value = util.get_arg_value("query", request.method)
if query_value == "":
res_obj = {"error_list":[{"error_code": "missing-query-key-in-query-json"}]}
elif util.is_valid_json(query_value) == False:
res_obj = {"error_list":[{"error_code": "invalid-query-json"}]}
else:
query_obj = json.loads(query_value)
util.trim_object(query_obj)
tmp_obj = apilib.categorized_typeahead(query_obj, config_obj)
if "error_list" in tmp_obj:
res_obj = tmp_obj
else:
res_obj = tmp_obj
except Exception, e:
res_obj = errorlib.get_error_obj("categorized_typeahead", traceback.format_exc(), path_obj)
