def get_undernutrition_detail(self, zscore_type, zscore):
''' Retrieve patients with undernutrition zscores within a date range in order to build a report
'''
report_detail = []
visits = self._get_visits(ordered = True)
for visit in visits:
try:
stats = visit.get_visit_statistics()
stat = float(zscore)
if zscore_type == 'stunted':
stat = float(stats.length_or_height_for_age.zscore)
elif zscore_type == 'underweight':
stat = float(stats.weight_for_age.zscore)
elif zscore_type == 'wasting':
stat = float(stats.weight_for_length_or_height.zscore)
else:
stat = float(zscore)
if stat < float(zscore):
if self.residence > '':
if util.string_eq_nocase(visit.get_patient().residence, self.residence):
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
elif self.country > '':
if visit.get_patient().country == self.country:
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
else:
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
except:
pass
return report_detail
def get_screening_data(self):
''' Return # of visits and # unique patients within a date range.
'''
report_data = []
visit_count = 0
visits = self._get_visits()
patients = []
# Get patients and count
if self.residence > '':
for visit in visits:
if util.string_eq_nocase(visit.get_patient().residence, self.residence):
(patients, visit_count) = add_screening_record(visit, patients, visit_count)
#patients.append(visit.get_patient())
#visit_count += 1
patient_count = len(set(patients))
elif self.country > '':
for visit in visits:
if visit.get_patient().country == self.country:
(patients, visit_count) = add_screening_record(visit, patients, visit_count)
#patients.append(visit.get_patient())
#visit_count += 1
patient_count = len(set(patients))
else:
patient_count = len(set([visit.get_patient() for visit in visits]))
visit_count = visits.count()
# Build report
report_data.append(ReportLine(visitcount = visit_count, patientcount=patient_count))
return report_data
def test_function(self):
self.assertFalse(util.string_eq_nocase('Anivorano', None))
self.assertFalse(util.string_eq_nocase('Anivorano', 'Andranonakoho'))
self.assertTrue(util.string_eq_nocase('Anivorano', 'anivorano'))
self.assertTrue(util.string_eq_nocase('Anivorano', 'Anivorano'))
self.assertTrue(util.string_eq_nocase(None, None))
self.assertTrue(util.string_eq_nocase('Anivorano', ''))
def get_screening_details(self):
''' Retrieve patients that have visits within a date range in order to build a report
'''
# TODO(dan): Factor get_screening_data and get_screening_details
report_detail = []
visits = self._get_visits(ordered = True)
for visit in visits:
if self.residence > '':
if util.string_eq_nocase(visit.get_patient().residence, self.residence):
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
elif self.country > '':
if visit.get_patient().country == self.country:
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
else:
report_detail.append(ReportLine(patient=visit.get_patient(), visit=visit))
return report_detail
def get_undernutrition_data(self, zscore):
''' Retrieve undernutrition data based on zscore in order to build a report
'''
# TODO(dan): Factor get_undernutrition_data and get_undernutrition_detail
report_data = []
patients = []
visits_latest = []
visits = self._get_visits()
stunted_children_counter = 0
underweight_children_counter = 0
wasting_children_counter = 0
visit_counter = 0
visit_latest_counter = 0
# Get latest visit per patient
for visit in visits:
if self.residence > '':
if util.string_eq_nocase(visit.get_patient().residence, self.residence):
(patients, visits_latest, visit_counter) = add_undernutrition_record(visit, patients, visits_latest, visit_counter)
#patients.append(visit.get_patient())
#visits_latest.append(visit.get_patient().get_latest_visit())
#visit_counter += 1
elif self.country > '':
if visit.get_patient().country == self.country:
(patients, visits_latest, visit_counter) = add_undernutrition_record(visit, patients, visits_latest, visit_counter)
#patients.append(visit.get_patient())
#visits_latest.append(visit.get_patient().get_latest_visit())
#visit_counter += 1
else:
(patients, visits_latest, visit_counter) = add_undernutrition_record(visit, patients, visits_latest, visit_counter)
#patients.append(visit.get_patient())
#visits_latest.append(visit.get_patient().get_latest_visit())
#visit_counter += 1
visits_latest = list(set(visits_latest))
for visit in visits_latest:
visit_latest_counter += 1
# If the statistics does not exist, ignore the visit in the counts
try:
stats = visit.get_visit_statistics()
if stats.length_or_height_for_age.zscore:
if stats.length_or_height_for_age.zscore < float(zscore):
stunted_children_counter += 1
if stats.weight_for_age.zscore:
if stats.weight_for_age.zscore < float(zscore):
underweight_children_counter += 1
if stats.weight_for_length_or_height.zscore:
if stats.weight_for_length_or_height.zscore < float(zscore):
wasting_children_counter += 1
except:
pass
# Remove duplicate patients
patients = list(set(patients))
percent_stunted = 0
percent_underweight = 0
percent_wasting = 0
total_undernourished = 0
percent_undernourished = 0
if visit_counter > 0:
# Calculate percentages
percent_stunted = stunted_children_counter * 100.00 / visit_counter
percent_underweight = underweight_children_counter * 100.00 / visit_counter
percent_wasting = wasting_children_counter * 100.00 / visit_counter
total_undernourished = stunted_children_counter + underweight_children_counter + wasting_children_counter
percent_undernourished = total_undernourished * 100.00 / visit_counter
# Build report
report_data.append(ReportLine(stunted=stunted_children_counter, percentagestunted=percent_stunted,
underweight=underweight_children_counter, percentageunderweight=percent_underweight,
wasting=wasting_children_counter, percentagewasting=percent_wasting,
totalundernourished = total_undernourished, percentundernourished = percent_undernourished,
visitcount=visit_counter, patientcount=len(patients)))
return report_data
