def fmtInfo(self) -> MultiDict:
if self._fmtInfo is None:
self._fmtInfo = MultiDict()
for prop in self.get_values('logset:logFormatInfo'):
key, sep, val = prop.partition('=')
self._fmtInfo.add(key, val)
return self._fmtInfo
def instance(cls, uri):
""" given the uri of a node, instantiate an object of this class based
on the properties of that node in the graph
"""
if not isinstance(uri, URIRef):
uri = graph.geturi(uri)
mdict = MultiDict(uri=[uri])
preds = [k for k in cls.getters.keys()] # impose an order
preds_by_uri = {graph.geturi(p): p for p in preds}
for pred_uri, obj in self.graph.predicate_objects(uri):
if pred_uri in preds_by_uri:
mdict.add(preds_by_uri[pred_uri], obj)
else:
# its a property we're not prepared for, just include it as an Identifier
mdict.add(pred_uri, obj)
return cls(properties=mdict)
def __init__(self, properties: MultiDict = None, **kwargs) -> None:
# lazy getting of uri is going to be common enough to just build it into the base class:
self._uri: Optional[str] = None
self._namespace: Optional[str] = None
self._label: Optional[str] = None
# eg "dct:title": set(Literal("my title"))
self.properties = MultiDict(properties)
for key, val in kwargs.items():
self.properties.add(key, val)
if 'uri' in self.properties:
self._uri = self.properties.one('uri')
self.properties.remove('uri')
if 'namespace' in self.properties:
self._namespace = self.properties.one('namespace')
self.properties.remove('namespace')
# if properties is not None and 'uri' in properties:
# logging.debug("setting uri from properties: {0}".format(properties['uri']))
# #self._uri = properties.pop('uri')[0]
# self._uri = properties.one('uri')
# properties.remove('uri')
#
# if properties is not None and 'namespace' in properties:
# logging.debug("setting namespace from properties: {0}".format(properties['namespace']))
# #self._uri = properties.pop('uri')[0]
# self._namespace = properties.one('namespace')
# properties.remove('namespace')
# all attributes we have a getter for should have an
# entry in properties, even if it is empty:
for predicate in self.getters:
if predicate not in self.properties:
self.properties.add(predicate)
# when adding a node to the graph and recursing into its properties,
# we want a mechanism to bypass adding nodes that are already in the
# graph:
self._in_graph = False
def __init__(self, mods : dict, ties : set, name : str = ""):
super().__init__(name)
#build operations
_ops = dict()
for mod_name, opcode in mods.items():
_ops[mod_name] = Operation(mod_name, opcode)
#gather values
_ties = MultiDict() # src -> (dst, dst_port)
for src_name, dst_name, dst_port in ties:
_ties[_ops[src_name]] = (_ops[dst_name], dst_port)
#build actual val objects
_values = set()
for src in _ties:
_values.add(Value(src, _ties[src]))
self._operations = frozenset(_ops.values())
self._values = frozenset(_values)
def factory(node: str):
cls = classes[node]
properties = MultiDict(uri=[cls.rdf_node])
return cls(properties=properties)
def known(cls, filters: Dict[str, str] = dict()):
""" generator-constructor over known nodes of a given type: """
# TODO instead of sampling property values, use "order by" and a douple
# loop to actually get the full set of properties for a uri
# (the general finder query is like:
# select ?uri <other fields> <optional fields where {
# ?uri a <self.rdf_class> .
# ?uri <other predicate> <other variable> .
# optional {
# ?uri <other predicate> <other variable> .
# } } order by ?uri
# then make a multi-dict of the properties
# so:
# - first add a class var: required: list of required properties
#
# # list of variables:
# nrequired = len(self.required)
# optionals = [ key for key in self.getters if key not in self.required ]
# ntotal = nrequired + len(optionals)
# required = [ '?v{:d}'.format(i) for i in range(nrequired) ]
# optional = [ '?v{:d}'.format(i) for i in range(nrequired,ntotal) ]
# query = "SELECT ?uri " + ' '.join(self.required) + ' '.join(optionals)
# query += " WHERE { "
# if self.rdf_superclass is None:
# query += " ?uri a {0} .".format(self.rdf_class)
# else:
# query += " ?uri a ?type ."
# query += " ?type rdfs:subClassOf* {0} .".format(self.rdf_superclass)
# for clause in zip(self.required, required):
# query += " ?uri {0} {1} . ".format(clause[0], clause[1])
# if noptional > 0:
# query += " OPTIONAL { "
# for clause in zip(optionals, optional):
# query += " ?uri {0} {1} . ".format(clause[0], clause[1])
# query += " } "
# query += " } ORDER BY ?uri "
# curr = None
# next = None
# for row in Graph.graph.query(query):
# next = row[0] # the uri
# if next != curr:
# mdict = Multidict(next)
# if curr is not None:
# yield cls(properties=mdict)
# curr = next
# # add each var to mdict
# for key,val in zip(required+optional,row):
# mdict.add(key, [val])
# yield cls(properties=mdict) # the last one
#
# or easier still: since we don't actually enforce that certain properties are
# required, make everything optional:
#
# if filters has uris/rdflib identifiers, then to convert to str they need < > around it
# but if they are a string like 'ddict:someThing' then they should stay as they are:
as_str = lambda x: "<{0}>".format(str(x)) if isinstance(x, Identifier
) else x
logging.debug("filters has: {0}".format(filters))
preds = [k for k in cls.getters.keys()] # impose an order
qvars = ['?v{:d}'.format(i) for i in range(len(preds))]
query = "SELECT ?uri {0} WHERE {{ ".format(' '.join(qvars))
if cls.rdf_superclass is None:
query += "?uri a {0} . ".format(cls.rdf_class)
else:
query += "?uri a ?type . "
query += "?type rdfs:subClassOf* {0} . ".format(cls.rdf_superclass)
for pred, var in zip(preds, qvars):
if pred in filters:
#query += "?uri {0} {1} . ".format(pred,str(filters[pred]))
query += "?uri {0} {1} . ".format(pred, as_str(filters[pred]))
else:
query += "OPTIONAL {{ ?uri {0} {1} . }} ".format(pred, var)
query += "} ORDER BY ?uri "
logging.debug("query is: {0}".format(query))
curr_uri = None
next_uri = None
mdict: MultiDict = None
#for row in graph.Graph.the_graph.query(query):
for row in graph.query(query):
logging.debug("found {0}".format(str(row)))
next_uri = row[0] # the uri
if next_uri != curr_uri:
if curr_uri is not None:
logging.debug("making a {0} with props {1}".format(
cls.__name__, str(mdict)))
yield cls(properties=mdict)
mdict = MultiDict(uri=[next_uri])
curr_uri = next_uri
# add each var to mdict
for key, val in zip(preds, row[1:]):
mdict.add(key, val)
if mdict is not None:
logging.debug("making a {0} with props {1}".format(
cls.__name__, str(mdict)))
yield cls(properties=mdict) # the last one
else:
logging.debug("no nodes of type {0} found".format(cls.__name__))
def catalog(self, candidates: Set[FileInfo],
context: Context) -> Set[FileInfo]:
filepatterns = context['filepatterns']
matching = set()
for regex in filepatterns:
logging.info("filepattern: {0}: {1}".format(regex, regex.pattern))
logging.info("{0:d} candidates".format(len(candidates)))
logging.info("candidates: {0}".format(candidates))
logging.info(
"after filtering: " +
str(filter(lambda x: regex.match(x.filename), candidates)))
matching |= set(
filter(lambda x: regex.match(x.filename), candidates))
# filter by MIMEtype:
mediatypes = self.properties['dcat:mediaType']
mimetest = lambda x: self.right_mime_type(x)
matching -= set(filter(mimetest, matching))
# args for the LogFormatType that will handle the actual file/source:
handler_args = {
'rdf_class': context['logFormatType'],
'fmtinfo': context['formatinfo']
}
# 'properties': self.properties
#context.push(handler_factory=handlers.factory)
context.push(handler_args=handler_args)
# hmm, everything the ConcreteLog infers, we can just pass as properties:
common_properties = MultiDict()
common_properties.add('logset:isInstanceOf', context['logseries_uri'])
common_properties.add('dcat:accessURL', context['dcat:accessURL'])
#common_properties.add_values('logset:subject', context['subjects'])
common_properties.add('logset:subject', *context['subjects'])
common_properties.add('namespace', context['namespace'])
logging.info("logset for concretelog has: {0}".format(
context['logset']))
# in most cases we are looking file-by-file .. FilePerTimepoint
# can override this default behavior
for f in matching:
#context.push(label=f.filename)
#context.push({'dcat:downloadURL': f.relpath + os.sep + f.filename})
properties = MultiDict(common_properties)
properties.add('rdfs:label', Literal(f.filename))
relpath = (f.relpath + os.sep + f.filename).lstrip(os.sep)
properties.add('dcat:downloadURL', Literal(relpath))
logging.info(
"properties for concretelog has: {0}".format(properties))
handler_args['target_url'] = os.sep.join(f) # full local path
log = ConcreteLog(properties=properties)
logging.info("adding log to graph: {0}".format(log))
try:
log.add_to_graph(context)
except UnsupportedLogFormatHandler as err:
logging.warn("logformat {0} not implemented".format(err))
properties.remove('rdfs:label')
properties.remove('dcat:downloadURL')
context.pop(('handler_args', ))
#context.pop('handler_factory')
return candidates - matching
def __init__(self, properties: MultiDict = MultiDict()) -> None:
super().__init__(properties)
self._fmtInfo = None # MultiDict()
self._filePatterns = None
self._logFormatType = None
