def buid_dict_from_ini_file(self, section):
"""
Return the .cfg file as a series of dictionaries depending on which section is called.
the configparser package reads everything as a string, so we have to cast it
ourselves. This isn't entriely straightforward, as we need to (i) catch None's,
(ii) catch underscores as isalpha() ignores these and (iii) cast float/ints
Parameters:
-----------
section : string
Identifier to grab the relevant section from the .cfg file, e.g. "params"
Returns:
--------
d : dictionary
dictionary containing stuff from the .cfg file.
"""
flags = ['model_optroot', "deciduous_model", \
'water_stress', "fixleafnc", "passiveconst", \
"calc_sw_params",'fixed_stem_nc','exudation',\
'adjust_rtslow', 'ncycle', 'grazing','output_ascii',\
'frost']
flags_up = ["assim_model", "print_options", "alloc_model", \
"ps_pathway","gs_model", "respiration_model"]
d = {}
options = self.Config.options(section)
for option in options:
try:
value = self.Config.get(section, option)
if section == "params" or section == "state":
if value.replace('_','').isalpha() and value != "None":
d[option] = value
elif value.replace('_','').isalpha() and value == "None":
d[option] = None
else:
d[option] = float(value)
elif section == "control":
if option in flags:
d[option] = str2boolean(value)
elif option in flags_up:
d[option] = value.upper()
elif value.replace('_','').isalpha() and value != "None":
d[option] = value
elif value.replace('_','').isalpha() and value == "None":
d[option] = None
else:
d[option] = int(value)
elif section == "print" or section == "files":
d[option] = value
except:
print("Error reading .Cfg file into dicitonary: %s!" % option)
d[option] = None
return d
def buid_dict_from_ini_file(self, section):
"""
Return the .cfg file as a series of dictionaries depending on which section is called.
the configparser package reads everything as a string, so we have to cast it
ourselves. This isn't entriely straightforward, as we need to (i) catch None's,
(ii) catch underscores as isalpha() ignores these and (iii) cast float/ints
Parameters:
-----------
section : string
Identifier to grab the relevant section from the .cfg file, e.g. "params"
Returns:
--------
d : dictionary
dictionary containing stuff from the .cfg file.
"""
flags = ['model_optroot', "deciduous_model", \
'water_stress', "fixleafnc", "passiveconst", \
"calc_sw_params",'fixed_stem_nc','exudation',\
'adjust_rtslow', 'ncycle', 'output_ascii',\
'frost']
flags_up = ["assim_model", "print_options", "alloc_model", \
"ps_pathway","gs_model", "respiration_model"]
d = {}
options = self.Config.options(section)
for option in options:
try:
value = self.Config.get(section, option)
if section == "params" or section == "state":
if value.replace('_','').isalpha() and value != "None":
d[option] = value
elif value.replace('_','').isalpha() and value == "None":
d[option] = None
else:
d[option] = float(value)
elif section == "control":
if option in flags:
d[option] = str2boolean(value)
elif option in flags_up:
d[option] = value.upper()
elif value.replace('_','').isalpha() and value != "None":
d[option] = value
elif value.replace('_','').isalpha() and value == "None":
d[option] = None
else:
d[option] = int(value)
elif section == "print" or section == "files":
d[option] = value
except:
print("Error reading .Cfg file into dicitonary: %s!" % option)
d[option] = None
return d
def turn_strings_into_bools(control):
flags = ['model_optroot', "deciduous_model", "modeljm", \
"water_stress", "fixleafnc", "passiveconst", "calc_sw_params",\
'fixed_stem_nc']
for i in flags:
setattr(control, i, str2boolean(getattr(control, i)))
def turn_strings_into_bools(control):
flags = ['model_optroot', "deciduous_model", "grazing", "modeljm", \
"water_stress", "fixleafnc", "passiveconst"]
for i in flags:
setattr(control, i, str2boolean(getattr(control, i)))
def turn_strings_into_bools(control):
flags = ['model_optroot', "deciduous_model", "grazing", "modeljm", \
"water_stress", "fixleafnc", "passiveconst"]
for i in flags:
setattr(control, i, str2boolean(getattr(control, i)))