def create_schema(self, check_exists=False):
super().create_schema(check_exists)
if check_exists and self.does_table_exist():
return
if "init_query" in self.config:
qstring = read_string("sql/{}.sql".format(
self.config["init_query"]))
qparams = self.get_query_params(self.date)
qstring = qstring.format(**qparams)
self.run_query(self.date, qstring)
else:
# Run a empty query to create schema
start_date = "1970-01-01"
qstring = read_string("sql/{}.sql".format(self.config["query"]))
qparams = self.get_query_params(start_date)
qstring = qstring.format(**qparams)
LIMIT_REGEX = r"(.*)(LIMIT\s+[0-9]+)(.*)"
if re.match(LIMIT_REGEX, qstring, re.IGNORECASE):
re.sub(LIMIT_REGEX,
r"\1 LIMIT 0 \3",
qstring,
flags=re.IGNORECASE)
else:
qstring += " LIMIT 0"
self.run_query(start_date, qstring)
def build_query(config: Dict[str, Any], start_date: str, end_date: str) -> str:
"""Build query based on configs and args.
:rtype: str
:param config: the config of the query
:param start_date: the start date string for the query
:param end_date: the end date string for the query
:return: the composed query string
"""
query = ""
if "udf" in config:
for udf in config["udf"]:
query += read_string("udf/{}.sql".format(udf))
if "udf_js" in config:
for udf_js in config["udf_js"]:
query += read_string("udf_js/{}.sql".format(udf_js))
if "query" in config:
query += read_string("sql/{}.sql".format(config["query"])).format(
project=config["project"],
dataset=config["dataset"],
table=config["table"],
start_date=start_date,
end_date=end_date,
)
return query
def daily_cleanup(self, d):
if self.is_write_append():
if "cleanup_query" in self.config:
qstring = read_string("sql/{}.sql".format(self.config["cleanup_query"]))
qparams = self.get_query_params(d)
query_job = self.client.query(qstring.format(**qparams))
query_job.result()
log.info("Done custom cleaning up.")
elif "execution_date_field" in self.config["params"]:
qstring = read_string("sql/cleanup_generic.sql")
qparams = self.get_query_params(d)
query_job = self.client.query(qstring.format(**qparams))
query_job.result()
log.info("Done generic cleaning up.")
def run_query(self, date, qstring=None):
if qstring is None:
qstring = read_string("sql/{}.sql".format(self.config["query"]))
qparams = self.get_query_params(date)
qstring = qstring.format(**qparams)
table_ref = self.client.dataset(
self.config["params"]["dataset"]).table(
self.config["params"]["dest"])
job_config = bigquery.QueryJobConfig()
job_config.write_disposition = (
bigquery.WriteDisposition.WRITE_APPEND if self.is_write_append()
else bigquery.WriteDisposition.WRITE_TRUNCATE)
if ("allow_field_addition" in self.config
and self.config["allow_field_addition"]):
job_config.schema_update_options = [
bigquery.SchemaUpdateOption.ALLOW_FIELD_ADDITION
]
job_config.destination = table_ref
if "partition_field" in self.config:
job_config.time_partitioning = bigquery.TimePartitioning(
type_=bigquery.TimePartitioningType.DAY,
field=self.config["partition_field"],
)
query = self.client.query(qstring, job_config=job_config)
query.result()
if "create_view_alt" in self.config and self.config["create_view_alt"]:
self.create_view("_view")
def test_read_string():
STR = "test1"
fname = _create_temp_file()
with open(fname, "w") as f:
f.write(STR)
data = read_string(fname)
assert data == STR
os.remove(fname)
def create_schema(self, check_exists=False):
udfs = []
if "udf" in self.config:
udfs += [("udf_%s" % x, read_string("udf/{}.sql".format(x)))
for x in self.config["udf"]]
if "udf_js" in self.config:
udfs += [("udf_js_%s" % x, read_string("udf_js/{}.sql".format(x)))
for x in self.config["udf_js"]]
for udf, qstring in udfs:
if check_exists and self.does_routine_exist(udf):
continue
qstring = qstring % (
self.config["params"]["project"],
self.config["params"]["dataset"],
)
# Initiate the query to create the routine.
query_job = self.client.query(qstring) # Make an API request.
# Wait for the query to complete.
query_job.result() # Waits for the job to complete.
log.info("Created routine {}".format(query_job.ddl_target_routine))
def create_view(self, postfix=None):
qstring = read_string("sql/{}.sql".format(self.config["query"]))
shared_dataset_ref = self.client.dataset(
self.config["params"]["dataset"])
view_ref = shared_dataset_ref.table(self.config["params"]["dest"] +
(postfix if postfix else ""))
view = bigquery.Table(view_ref)
qparams = self.get_query_params(self.date)
view.view_query = qstring.format(**qparams)
if self.does_table_exist(postfix):
view = self.client.update_table(view,
["view_query"]) # API request
else:
view = self.client.create_table(view) # API request
log.info("Successfully created view at {}".format(view.full_table_id))
def create_schema(self, check_exists=False):
super().create_schema(check_exists)
if check_exists and self.does_table_exist():
return
qstring = read_string("sql/{}.sql".format(self.config["query"]))
shared_dataset_ref = self.client.dataset(self.config["params"]["dataset"])
view_ref = shared_dataset_ref.table(self.config["params"]["dest"])
view = bigquery.Table(view_ref)
qparams = self.get_query_params(self.date)
view.view_query = qstring.format(**qparams)
if self.does_table_exist():
view = self.client.update_table(view, ["view_query"]) # API request
else:
view = self.client.create_table(view) # API request
log.info("Successfully created view at {}".format(view.full_table_id))
def run_query(self, date, qstring=None):
if qstring is None:
qstring = read_string("sql/{}.sql".format(self.config["query"]))
qparams = self.get_query_params(date)
qstring = qstring.format(**qparams)
table_ref = self.client.dataset(self.config["params"]["dataset"]).table(
self.config["params"]["dest"]
)
job_config = bigquery.QueryJobConfig()
job_config.write_disposition = (
bigquery.WriteDisposition.WRITE_APPEND
if self.is_write_append()
else bigquery.WriteDisposition.WRITE_TRUNCATE
)
job_config.destination = table_ref
if "partition_field" in self.config:
job_config.time_partitioning = bigquery.TimePartitioning(
type_=bigquery.TimePartitioningType.DAY,
field=self.config["partition_field"],
)
query = self.client.query(qstring, job_config=job_config)
query.result()
def extract_via_fs(
self,
source: str,
config: Dict[str, Any],
stage: str = "raw",
date: datetime.datetime = None,
) -> DataFrame:
"""Extract data from file system and convert into DataFrame.
The logic is based on task config, see `configs/*.py`
:rtype: DataFrame
:param source: name of the data source to be extracted,
specified in task config, see `configs/*.py`
:param config: config of the data source to be extracted,
specified in task config, see `configs/*.py`
:param stage: the stage of the loaded data, could be raw/staging/production.
:param date: the date part of the data file name,
will use `self.current_date` if not specified
:return: the extracted DataFrame
"""
# extract paged raw files
if "paths" in config:
fpaths = config["paths"]
elif stage == "raw":
fpaths = self.get_filepaths(source, config, stage, "fs", date)
else:
fpaths = [self.get_filepath(source, config, stage, "fs", date)]
if "iterator" in config:
extracted = None if "iterator" not in config else dict()
for fpath in fpaths:
raw = read_string(fpath)
it = get_file_ext(fpath)
self.raw[it] = raw
extracted[it] = convert_df(raw, config)
log.info("%s-%s-%s/%s x %d iterators extracted from file system" %
(
stage,
self.task,
source,
(self.current_date if date is None else date).date(),
len(fpaths),
))
else:
extracted = None
for fpath in fpaths:
raw = read_string(fpath)
if extracted is None:
self.raw[source] = [raw]
extracted = convert_df(raw, config)
else:
self.raw[source] += [raw]
extracted = extracted.append(convert_df(raw, config))
extracted = extracted.reset_index(drop=True)
log.info("%s-%s-%s/%s x %d pages extracted from file system" % (
stage,
self.task,
source,
(self.current_date if date is None else date).date(),
len(fpaths),
))
return extracted