def _get_all_mapping_genes(cursor):
"""
Get dictionary of all genes from the mapping database.
This dictionary is keyed on the gene's pk in the mapping
database.
The value is a dictionary of fieldname:value pairs in the
mapping database.
"""
fieldnames = ['id', 'cosmid_id', 'locus', 'gene_type']
return get_field_dictionary(cursor, 'Gene', fieldnames)
def _get_all_mapping_genes(cursor):
"""
Get dictionary of all genes from the mapping database.
This dictionary is keyed on the gene's pk in the mapping
database.
The value is a dictionary of fieldname:value pairs in the
mapping database.
"""
fieldnames = ['id', 'cosmid_id', 'locus', 'gene_type']
return get_field_dictionary(cursor, 'Gene', fieldnames)
def _get_all_mapping_clones(cursor):
"""
Get dictionary of all clones from the mapping database.
This dictionary is keyed on the clone's pk in the mapping
database.
The value is a dictionary of fieldname:value pairs in the
mapping database.
"""
fieldnames = ['id', 'library', 'clone_type', 'forward_primer',
'reverse_primer']
return get_field_dictionary(cursor, 'Clone', fieldnames)
def _get_all_mapping_clones(cursor):
"""
Get dictionary of all clones from the mapping database.
This dictionary is keyed on the clone's pk in the mapping
database.
The value is a dictionary of fieldname:value pairs in the
mapping database.
"""
fieldnames = [
'id', 'library', 'clone_type', 'forward_primer', 'reverse_primer'
]
return get_field_dictionary(cursor, 'Clone', fieldnames)
