def recived_mission(update, context):
global mode
global link
global target
target = update.effective_message.text
if "/cancel" == target.strip()[:7]:
return cancel(update, context)
# extract lid,tid from Link(shared & Target)
lid = "".join(re.findall(regex, link))
tid = "".join(re.findall(regex, target))
# extract Shared_Link folderName
if len(lid) == 28 or len(lid) == 33:
foldername = folder_name(settings.Remote, lid, lid)
elif len(lid) != 28 and len(lid) != 33:
d_id = lid
foldername = drive_get(d_id)['name']
# get Target_folderName under quick mode
if "quick" == mode:
# tid = Pre_Dst_id under quick mode
tid = settings.Pre_Dst_id
if len(tid) == 28 or len(tid) == 33:
target_folder = folder_name(settings.Remote, tid, tid)
elif len(tid) != 28 and len(tid) != 33:
d_id = tid
target_folder = drive_get(d_id)['name']
# get Target_folderName under copy mode
elif "copy" == mode:
if len(tid) == 28 or len(tid) == 33:
target_folder = folder_name(settings.Remote, tid, tid)
elif len(tid) != 28 and len(tid) != 33:
d_id = tid
target_folder = drive_get(d_id)['name']
# sendmsg Mission.INFO
update.effective_message.reply_text(task_message().format(
foldername, lid, target_folder, foldername))
# Build Mission Command
commandstr = """{}' JSUSPLIT 'copy' JSUSPLIT '{}:{{{}}}' JSUSPLIT '{}:{{{}}}/{}' JSUSPLIT '{}' JSUSPLIT '{}' JSUSPLIT '{}""".format(
settings.Clone,
settings.Remote,
lid,
settings.Remote,
tid,
foldername,
settings.Run_Mode,
settings.TRANSFER,
settings.CHECKERS,
)
command = commandstr.split("' JSUSPLIT '")
#print(command)
return ConversationHandler.END, copyprocess(update, context, command)
def recived_mission(update, context):
global mode
global link
global target
target = update.effective_message.text
# extract lid,tid from Link(shared & Target)
lid = "".join(re.findall(regex, link))
tid = "".join(re.findall(regex, target))
# extract Shared_Link folderName
if len(lid) == 28 or len(lid) == 33:
foldername = folder_name(settings.Remote, lid, lid)
elif len(lid) != 28 and len(lid) != 33:
d_id = lid
foldername = drive_get(d_id)
# get Target_folderName under quick mode
if "quick" == mode:
# tid = Pre_Dst_id under quick mode
tid = settings.Pre_Dst_id
if len(tid) == 28 or len(tid) == 33:
target_folder = folder_name(settings.Remote, tid, tid)
elif len(tid) != 28 and len(tid) != 33:
d_id = tid
target_folder = drive_get(d_id)
# get Target_folderName under copy mode
elif "copy" == mode:
if len(tid) == 28 or len(tid) == 33:
target_folder = folder_name(settings.Remote, tid, tid)
elif len(tid) != 28 and len(tid) != 33:
d_id = tid
target_folder = drive_get(d_id)
# sendmsg Mission.INFO
update.effective_message.reply_text(task_message().format(
foldername, lid, target_folder, foldername))
# Build Mission Command
command = """gclone copy {}:{{{}}} {}:{{{}}}/"{}" {} {}""".format(
settings.Remote,
lid,
settings.Remote,
tid,
foldername,
settings.Run_Mode,
settings.TRANSFER,
)
copyprocess(update, context, command)
return ConversationHandler.END
def print_folders(dis_weight):
folders = dict()
for T1, T2 in dis_weight:
for i_dis, i_weight in dis_weight[T1, T2].items():
folders[utils.folder_name(T1, T2, i_dis)] = i_weight
with open("folders", "w") as file:
print(json.dumps(folders, indent=4), file=file)
def cal_ABACUS(T1, T2, i_dis):
folder = pathlib.Path(utils.folder_name(T1, T2, i_dis)).resolve()
folder.mkdir(parents=True, exist_ok=False)
with open(folder / "INPUT", "w") as file:
info = utils.read_info()
input_dict = read_stru.get_input_dict()
input_dict["ntype"] = 1 if T1 == T2 else 2
input_dict["exx_hybrid_type"] = 'opt_orb'
input_dict["nbands"] = (read_stru.get_nw()[T1] if abs(i_dis) < 1E-10
else read_stru.get_nw()[T1] +
read_stru.get_nw()[T2])
input_dict["nspin"] = 1
input_dict["gamma_only"] = 1
input_dict["pseudo_dir"] = os.path.abspath(
input_dict.get("pseudo_dir", r"./"))
input_dict["exx_opt_orb_lmax"] = len(info["Nu"]) - 1
read_stru.print_input(file, input_dict)
with open(folder / "STRU", "w") as file:
Ts = (T1, ) if T1 == T2 else (T1, T2)
file.write("ATOMIC_SPECIES\n")
pseudo_path = read_stru.get_pseudo_path()
for T in Ts:
file.write(f"{T} 1 {pseudo_path[T]}\n")
file.write("\nNUMERICAL_ORBITAL\n")
lcao_path = read_stru.get_lcao_path()
for T in Ts:
file.write(f"{lcao_path[T]}\n")
file.write(
textwrap.dedent(f"""
LATTICE_CONSTANT
1\n
LATTICE_VECTORS
30 0 0
0 30 0
0 0 30\n
ATOMIC_POSITIONS
Cartesian
"""))
if T1 == T2:
if abs(i_dis) < 1E-10:
file.write(
textwrap.dedent(f"""
{T1}
0
1
0 0 0 0 0 0
"""))
else:
file.write(
textwrap.dedent(f"""
{T1}
0
2
0 0 0 0 0 0
{i_dis} 0 0 0 0 0
"""))
else:
file.write(
textwrap.dedent(f"""
{T1}
0
1
0 0 0 0 0 0\n
{T2}
0
1
{i_dis} 0 0 0 0 0
"""))
with open(folder / "KPT", "w") as file:
file.write(
textwrap.dedent(f"""\
K_POINTS
0
Gamma
1 1 1 0 0 0
"""))
info = utils.read_info()
if utils.sub == "qsub":
with open(folder / "sub.sh", "w") as file:
file.write(
textwrap.dedent(f"""\
#!/bin/bash
#PBS -q gold5120
#PBS -l nodes=1:ppn=1
#PBS -l walltime=1:00:00
#PBS -o job.log
#PBS -e job.err
ulimit -s unlimited
cd $PBS_O_WORKDIR
EXEC={info["ABACUS"]}
mpirun -n 1 -env OMP_NUM_THREADS=1 $EXEC
"""))
elif utils.sub == "bsub":
with open(folder / "sub.sh", "w") as file:
file.write(
textwrap.dedent(f"""\
#!/bin/sh
#BSUB -q renxg
#BSUB -o job.log -e job.err
#BSUB -n 1
EXEC={info["ABACUS"]}
mpirun -n 1 -env OMP_NUM_THREADS=1 $EXEC
"""))
os.chdir(folder)
if utils.sub == "qsub":
os.system("qsub sub.sh")
elif utils.sub == "bsub":
os.system("bsub < sub.sh")
elif utils.sub == "tianh2":
os.system(f'yhrun -n 1 -c 1 {info["ABACUS"]} >Log.txt')
os.chdir("../")
# trials to updated the network weights
up_net = 400
# network units
net = 'ugru'
# instance
inst = 0
# folder where data will be saved
main_folder = '/home/molano/priors_project/priors/'
# num trials file
num_tr = 280000
# worker
worker = 0
test = '' # '/test'
exp = ut.folder_name(gamma=gamma, up_net=up_net, trial_dur=trial_dur,
rep_prob=rep_prob, exp_dur=exp_dur, rewards=rewards,
block_dur=block_dur, num_units=num_units,
stim_ev=stim_ev, network=net, learning_rate=lr,
instance=inst, main_folder=main_folder) +\
test + '/trains/train_' + str(worker) + '/trials_stats_0_' +\
str(num_tr) + '.npz'
data = np.load(exp)
start_per = 20000
ev = np.reshape(data['evidence'], (1, data['evidence'].shape[0])).copy()
perf = np.reshape(data['performance'],
(1, data['performance'].shape[0])).copy()
action = np.reshape(data['action'], (1, data['action'].shape[0])).copy()
stim_pos = np.reshape(data['stims_position'],
(1, data['stims_position'].shape[0])).copy()
plt.figure(figsize=(8, 8), dpi=100)
plot_psychometric_curves(ev[:, start_per:],
perf[:, start_per:],
def main_priors(load_model=False, train=True, gamma=.8, up_net=5,
trial_dur=10, rep_prob=(0.2, 0.8), exp_dur=1000,
rewards=(-0.1, 0.0, 1.0, -1.0), block_dur=200,
num_units=32, stim_ev=.3, network='ugru',
learning_rate=1e-3, instance=0, main_folder='',
**kwargs):
a_size = 3 # number of actions
state_size = a_size # number of inputs
data_path = utils.folder_name(gamma=gamma, up_net=up_net,
trial_dur=trial_dur, rep_prob=rep_prob,
exp_dur=exp_dur, rewards=rewards,
block_dur=block_dur, num_units=num_units,
stim_ev=stim_ev, network=network,
learning_rate=learning_rate,
instance=instance, main_folder=main_folder)
data = {'trial_dur': trial_dur, 'rep_prob': rep_prob, 'learning_rate':learning_rate,
'rewards': rewards, 'stim_ev': stim_ev, 'exp_dur': exp_dur,
'block_dur': block_dur, 'gamma': gamma, 'num_units': num_units,
'up_net': up_net, 'network': network}
# create folder from which to load the model
model_load_path = data_path + '/model_meta_context'
if not train:
data_path += '/test/'
for ind in kwargs.keys():
old_param = ind[1:]
data[old_param] = kwargs[ind]
data_path += '_' + old_param + '_' + utils.list_str((kwargs[ind]))
data_path += '/'
# create folder to save the data
if not os.path.exists(data_path):
os.makedirs(data_path)
# create folder to save the model
model_path = data_path + '/model_meta_context'
if not os.path.exists(model_path):
os.makedirs(model_path)
# save experiment setup
np.savez(data_path + '/experiment_setup.npz', **data)
print(data_path)
tf.reset_default_graph()
with tf.device("/cpu:0"):
global_episodes = tf.Variable(0, dtype=tf.int32,
name='global_episodes',
trainable=False)
trainer = tf.train.AdamOptimizer(learning_rate=data['learning_rate'])
ag.AC_Network(a_size, state_size, 'global',
None, data['num_units'], data['network']) # Generate global net
# Set workers to number of available CPU threads
num_workers = multiprocessing.cpu_count()
workers = []
# Create worker classes
for i in range(num_workers):
saving_path = data_path + '/trains/train_' + str(i)
if not os.path.exists(saving_path):
os.makedirs(saving_path)
workers.append(ag.Worker(task.PriorsEnv(upd_net=data['up_net'],
trial_dur=data['trial_dur'],
rep_prob=data['rep_prob'],
rewards=data['rewards'],
block_dur=data['block_dur'],
stim_ev=data['stim_ev'],
folder=saving_path,
plot=(i == 0)),
i, a_size, state_size,
trainer, model_path, global_episodes,
data_path, data['num_units'], data['network']))
saver = tf.train.Saver(max_to_keep=5)
with tf.Session() as sess:
coord = tf.train.Coordinator()
if load_model:
print('Loading Model...')
ckpt = tf.train.get_checkpoint_state(model_load_path)
saver.restore(sess, ckpt.model_checkpoint_path)
else:
sess.run(tf.global_variables_initializer())
worker_threads = []
for worker in workers:
worker_work = lambda: worker.work(data['gamma'], sess, coord,
saver, train, data['exp_dur'])
thread = threading.Thread(target=(worker_work))
thread.start()
worker_threads.append(thread)
coord.join(worker_threads)